Wall clock time and date at job start Mon Mar 30 2020 07:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39546 * 120.53242 * 92.91615 * 3 2 1 5 5 C 1.39388 * 118.19142 * 179.97438 * 4 3 2 6 6 N 1.38552 * 120.48867 * 179.97438 * 5 4 3 7 7 C 1.36904 * 120.00147 * 359.97438 * 6 5 4 8 8 H 1.08005 * 119.99701 * 0.02562 * 7 6 5 9 9 C 1.38862 * 120.00242 * 180.02562 * 7 6 5 10 10 N 1.31524 * 120.00175 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99867 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47161 * 89.99809 * 11 9 7 13 13 H 1.48495 * 109.46861 * 210.00037 * 11 9 7 14 14 H 1.48496 * 109.47015 * 329.99600 * 11 9 7 15 15 N 1.33165 * 119.02200 * 359.97438 * 5 4 3 16 16 C 1.31741 * 120.97382 * 0.02562 * 15 5 4 17 17 N 1.31660 * 122.00507 * 359.73470 * 16 15 5 18 18 H 4.52740 * 13.91397 * 0.02562 * 4 2 1 19 19 H 1.08002 * 120.90034 * 359.97438 * 4 3 2 20 20 H 0.97003 * 120.00054 * 180.02562 * 6 5 4 21 21 H 0.97004 * 120.00288 * 180.02562 * 10 9 7 22 22 H 1.08001 * 118.99739 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3149 0.0621 -1.2004 5 6 4.7076 0.0604 -1.1435 6 7 5.4587 0.1194 -2.3063 7 6 4.8336 0.1795 -3.5228 8 1 3.7548 0.1813 -3.5760 9 6 5.5864 0.2382 -4.6882 10 7 4.9858 0.2965 -5.8568 11 14 7.4521 0.2344 -4.5960 12 1 7.9471 -1.1649 -4.6416 13 1 8.0060 0.9931 -5.7461 14 1 7.8863 0.8720 -3.3272 15 7 5.3056 0.0011 0.0448 16 6 4.6008 -0.0558 1.1564 17 7 3.2842 -0.0519 1.1488 18 1 -1.0500 0.0005 0.0001 19 1 2.7984 0.1097 -2.1477 20 1 6.4276 0.1174 -2.2585 21 1 5.5116 0.3370 -6.6709 22 1 5.1187 -0.1034 2.1029 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959807.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:20 Heat of formation + Delta-G solvation = 90.393724 kcal Electronic energy + Delta-G solvation = -10466.681418 eV Core-core repulsion = 8408.957359 eV Total energy + Delta-G solvation = -2057.724059 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 189.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.53145 -37.83868 -35.34967 -34.32828 -32.64806 -31.40122 -27.07864 -25.65059 -23.92036 -20.75423 -20.28973 -18.32377 -17.59985 -16.55774 -16.25132 -15.80509 -15.70112 -15.00995 -14.69250 -14.19333 -13.74049 -12.89972 -12.65572 -12.29571 -12.10582 -11.83778 -11.30488 -11.10727 -10.38261 -10.05350 -9.47669 -8.60376 -6.04243 -0.07830 0.46803 1.27240 1.31199 1.35515 1.71100 2.09135 2.12834 2.55049 2.84238 3.08130 3.34595 3.69542 4.09219 4.30401 4.59598 4.82854 5.01035 5.36622 5.54349 5.80724 6.20817 6.43620 6.52318 7.03793 7.10755 7.57673 8.52681 Molecular weight = 189.06amu Principal moments of inertia in cm(-1) A = 0.050400 B = 0.010884 C = 0.008980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.418409 B = 2571.869403 C = 3117.446188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.210 4.210 3 C 0.281 3.719 4 C -0.288 4.288 5 C 0.383 3.617 6 N -0.549 5.549 7 C -0.325 4.325 8 H 0.094 0.906 9 C 0.004 3.996 10 N -0.905 5.905 11 Si 0.949 3.051 12 H -0.258 1.258 13 H -0.265 1.265 14 H -0.251 1.251 15 N -0.616 5.616 16 C 0.338 3.662 17 N -0.600 5.600 18 H 0.280 0.720 19 H 0.126 0.874 20 H 0.391 0.609 21 H 0.286 0.714 22 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 -0.401 7.782 7.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.211 4.211 3 C 0.144 3.856 4 C -0.319 4.319 5 C 0.136 3.864 6 N -0.162 5.162 7 C -0.455 4.455 8 H 0.111 0.889 9 C -0.199 4.199 10 N -0.541 5.541 11 Si 0.770 3.230 12 H -0.183 1.183 13 H -0.190 1.190 14 H -0.175 1.175 15 N -0.346 5.346 16 C 0.047 3.953 17 N -0.324 5.324 18 H 0.296 0.704 19 H 0.144 0.856 20 H 0.228 0.772 21 H 0.096 0.904 22 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.238 -0.406 8.049 8.154 hybrid contribution 0.550 0.069 -1.298 1.411 sum -0.688 -0.337 6.751 6.795 Atomic orbital electron populations 1.25960 0.96095 0.93330 0.95853 1.19749 0.91603 1.05530 1.04202 1.16742 0.89183 0.91076 0.88640 1.21849 0.93885 1.16778 0.99406 1.18354 0.88576 0.92927 0.86589 1.40832 1.07300 1.65708 1.02380 1.19295 0.94488 1.50100 0.81628 0.88862 1.25793 1.04426 0.95760 0.93919 1.69749 1.38784 1.47149 0.98463 0.85548 0.77843 0.79944 0.79618 1.18284 1.18955 1.17506 1.67856 1.41887 1.27010 0.97801 1.25088 0.86222 0.87716 0.96271 1.68484 1.10448 1.25341 1.28163 0.70383 0.85619 0.77188 0.90406 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 19.25 74.32 1.43 -0.95 14 2 C -0.21 -7.54 13.51 30.02 0.41 -7.14 14 3 C 0.28 11.85 6.62 40.45 0.27 12.12 14 4 C -0.29 -13.29 9.12 22.86 0.21 -13.08 14 5 C 0.38 17.88 7.67 133.05 1.02 18.90 14 6 N -0.55 -26.37 5.23 -188.80 -0.99 -27.36 14 7 C -0.33 -17.24 10.04 84.05 0.84 -16.39 14 8 H 0.09 5.35 5.96 -2.91 -0.02 5.34 14 9 C 0.00 0.23 5.50 84.89 0.47 0.70 14 10 N -0.90 -49.66 13.96 21.66 0.30 -49.36 14 11 Si 0.95 38.48 27.74 68.60 1.90 40.39 14 12 H -0.26 -10.13 7.11 99.48 0.71 -9.43 14 13 H -0.27 -10.41 7.11 99.48 0.71 -9.70 14 14 H -0.25 -9.55 6.52 99.48 0.65 -8.91 14 15 N -0.62 -25.99 10.46 -197.77 -2.07 -28.05 14 16 C 0.34 12.37 12.27 180.94 2.22 14.59 14 17 N -0.60 -23.99 10.39 -193.61 -2.01 -26.00 14 18 H 0.28 3.42 7.80 -4.42 -0.03 3.39 14 19 H 0.13 6.04 6.07 -2.91 -0.02 6.03 14 20 H 0.39 17.47 5.88 -92.71 -0.54 16.92 14 21 H 0.29 14.42 8.31 -92.71 -0.77 13.64 14 22 H 0.23 5.92 8.06 -2.91 -0.02 5.89 14 Total: -1.00 -63.11 214.57 4.66 -58.45 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.65 Total: 23.19 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.87 Total: 8.75 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -4.77 Total: -130.77 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.39 kcal Total: -63.11 4.66 -58.45 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959807.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.844 kcal (2) G-P(sol) polarization free energy of solvation -63.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds