Wall clock time and date at job start Mon Mar 30 2020 07:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 H 1.09005 * 109.47258 * 304.99628 * 3 2 1 5 5 C 1.52994 * 109.47216 * 65.00323 * 3 2 1 6 6 C 1.50701 * 109.46987 * 185.00021 * 3 2 1 7 7 C 1.38175 * 120.40449 * 274.99974 * 6 3 2 8 8 C 1.39667 * 118.32421 * 179.72594 * 7 6 3 9 9 N 1.38521 * 120.54052 * 179.97438 * 8 7 6 10 10 C 1.36937 * 119.99593 * 0.02562 * 9 8 7 11 11 H 1.08003 * 120.00016 * 359.97438 * 10 9 8 12 12 C 1.38851 * 119.99890 * 179.97438 * 10 9 8 13 13 N 1.31537 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99814 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47135 * 90.00551 * 14 12 10 16 16 H 1.48498 * 109.46854 * 209.99886 * 14 12 10 17 17 H 1.48493 * 109.47196 * 329.99911 * 14 12 10 18 18 N 1.33069 * 118.92463 * 0.02562 * 8 7 6 19 19 C 1.31705 * 120.68437 * 359.97438 * 18 8 7 20 20 N 1.31827 * 121.84931 * 359.97438 * 19 18 8 21 21 H 1.08996 * 109.47196 * 300.00024 * 1 2 3 22 22 H 1.08998 * 109.47119 * 60.00232 * 1 2 3 23 23 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47130 * 240.00437 * 2 1 3 25 25 H 1.08999 * 109.47549 * 120.00405 * 2 1 3 26 26 H 1.08996 * 109.47459 * 59.99297 * 5 3 2 27 27 H 1.09001 * 109.47599 * 180.02562 * 5 3 2 28 28 H 1.09009 * 109.46857 * 300.00068 * 5 3 2 29 29 H 1.08003 * 120.83519 * 359.70410 * 7 6 3 30 30 H 0.96991 * 120.00381 * 179.97438 * 9 8 7 31 31 H 0.96994 * 119.99535 * 180.02562 * 13 12 10 32 32 H 1.08006 * 119.07338 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 6 4.3363 1.3068 0.9983 8 6 5.7231 1.3085 0.8328 9 7 6.5627 1.1742 1.9264 10 6 6.0345 1.0379 3.1824 11 1 4.9633 1.0354 3.3204 12 6 6.8760 0.9027 4.2785 13 7 8.1806 0.9062 4.1104 14 14 6.1554 0.7175 5.9919 15 1 5.9469 -0.7227 6.2881 16 1 7.0919 1.2971 6.9880 17 1 4.8548 1.4307 6.0617 18 7 6.2248 1.4422 -0.3924 19 6 5.4293 1.5705 -1.4342 20 7 4.1168 1.5717 -1.3112 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.0698 1.5875 2.1491 27 1 1.9982 3.1543 1.3072 28 1 0.5489 2.1252 1.3969 29 1 3.8958 1.2010 1.9788 30 1 7.5246 1.1760 1.8024 31 1 8.7684 0.8115 4.8761 32 1 5.8645 1.6769 -2.4169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:38 Heat of formation + Delta-G solvation = 25.866566 kcal Electronic energy + Delta-G solvation = -14750.147917 eV Core-core repulsion = 12323.927556 eV Total energy + Delta-G solvation = -2426.220362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80374 -36.43073 -35.49958 -32.48689 -31.46657 -29.81414 -28.29893 -25.30062 -24.98073 -22.78383 -21.67408 -19.72615 -18.20139 -16.75069 -16.07820 -14.87439 -14.65818 -14.28611 -14.02042 -13.85117 -13.51145 -13.33408 -12.93927 -12.28291 -11.90767 -11.75471 -11.57032 -11.43734 -10.94821 -10.76464 -10.67526 -10.53123 -10.50370 -10.39699 -9.37779 -9.25398 -8.70278 -8.03415 -7.39059 -6.74188 -3.99671 2.20373 2.47995 3.07552 3.08567 3.11381 3.88561 4.66856 4.75764 4.86771 5.10869 5.15232 5.35066 5.39533 5.62034 5.68170 5.76414 5.83059 6.09060 6.13004 6.18878 6.25710 6.29225 6.39161 6.58418 6.65067 6.66263 6.89742 7.13877 7.44578 7.74796 8.16537 8.60925 9.11056 9.21875 9.63085 10.41713 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.008582 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.974546 B = 3262.012596 C = 4135.992742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.035 4.035 4 H 0.081 0.919 5 C -0.146 4.146 6 C 0.189 3.811 7 C -0.300 4.300 8 C 0.375 3.625 9 N -0.515 5.515 10 C -0.307 4.307 11 H 0.106 0.894 12 C 0.028 3.972 13 N -0.879 5.879 14 Si 0.936 3.064 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.266 1.266 18 N -0.612 5.612 19 C 0.329 3.671 20 N -0.614 5.614 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.129 0.871 30 H 0.405 0.595 31 H 0.279 0.721 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -0.241 -2.834 10.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.054 4.054 4 H 0.100 0.900 5 C -0.203 4.203 6 C 0.051 3.949 7 C -0.331 4.331 8 C 0.127 3.873 9 N -0.122 5.122 10 C -0.438 4.438 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.515 5.515 14 Si 0.762 3.238 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.190 1.190 18 N -0.341 5.341 19 C 0.036 3.964 20 N -0.340 5.340 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.241 0.759 31 H 0.089 0.911 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.601 -0.198 -3.197 10.121 hybrid contribution 0.051 -0.189 1.619 1.631 sum -9.550 -0.386 -1.578 9.687 Atomic orbital electron populations 1.21815 0.95927 1.01248 1.01735 1.21492 0.95304 0.95749 1.02419 1.19952 0.89992 0.96704 0.98796 0.90023 1.21915 1.00603 1.00696 0.97111 1.20858 0.95051 0.90493 0.88486 1.21575 0.93209 1.18019 1.00308 1.18421 0.88473 0.93824 0.86621 1.40783 1.07941 1.60646 1.02867 1.19767 0.94259 1.48008 0.81757 0.87670 1.25398 0.95151 0.96522 1.00739 1.69687 1.02464 1.46343 1.32993 0.85753 0.78912 0.78873 0.80255 1.19930 1.20431 1.19031 1.67775 1.41201 1.26459 0.98698 1.24051 0.85790 0.90271 0.96249 1.68028 1.12909 1.26758 1.26350 0.92512 0.92850 0.93044 0.91883 0.91778 0.91943 0.92650 0.92425 0.85308 0.75901 0.91095 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.11 -1.57 5.38 -26.73 -0.14 -1.72 16 3 C -0.04 -0.55 2.73 -91.77 -0.25 -0.80 16 4 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 5 C -0.15 -2.06 8.39 37.15 0.31 -1.75 16 6 C 0.19 3.78 5.82 -82.31 -0.48 3.30 16 7 C -0.30 -6.59 8.48 -39.07 -0.33 -6.92 16 8 C 0.38 9.11 7.68 -154.71 -1.19 7.92 16 9 N -0.52 -13.16 5.43 -10.98 -0.06 -13.22 16 10 C -0.31 -7.79 9.56 -15.04 -0.14 -7.93 16 11 H 0.11 2.53 5.73 -52.48 -0.30 2.23 16 12 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 13 N -0.88 -23.09 13.05 55.49 0.72 -22.37 16 14 Si 0.94 19.16 29.55 -169.99 -5.02 14.14 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 N -0.61 -14.25 10.47 -13.79 -0.14 -14.39 16 19 C 0.33 6.77 12.28 -92.20 -1.13 5.63 16 20 N -0.61 -12.67 10.37 -10.87 -0.11 -12.79 16 21 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.67 6.57 -51.92 -0.34 0.33 16 29 H 0.13 2.74 4.44 -52.48 -0.23 2.51 16 30 H 0.41 10.71 8.02 -40.82 -0.33 10.39 16 31 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.17 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 268.81 15.07 4.05 4.05 Total: -1.00 -27.51 268.81 -7.64 -35.14 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -3.98 Total: 12.40 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.09 Total: -2.96 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 0.41 Total: -62.77 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.51 -7.64 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.012 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds