Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 H 1.09005 * 109.47258 * 304.99628 * 3 2 1 5 5 C 1.52994 * 109.47216 * 65.00323 * 3 2 1 6 6 C 1.50701 * 109.46987 * 185.00021 * 3 2 1 7 7 C 1.38175 * 120.40449 * 274.99974 * 6 3 2 8 8 C 1.39667 * 118.32421 * 179.72594 * 7 6 3 9 9 N 1.38521 * 120.54052 * 179.97438 * 8 7 6 10 10 C 1.36937 * 119.99593 * 0.02562 * 9 8 7 11 11 H 1.08003 * 120.00016 * 359.97438 * 10 9 8 12 12 C 1.38851 * 119.99890 * 179.97438 * 10 9 8 13 13 N 1.31537 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99814 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47135 * 90.00551 * 14 12 10 16 16 H 1.48498 * 109.46854 * 209.99886 * 14 12 10 17 17 H 1.48493 * 109.47196 * 329.99911 * 14 12 10 18 18 N 1.33069 * 118.92463 * 0.02562 * 8 7 6 19 19 C 1.31705 * 120.68437 * 359.97438 * 18 8 7 20 20 N 1.31827 * 121.84931 * 359.97438 * 19 18 8 21 21 H 1.08996 * 109.47196 * 300.00024 * 1 2 3 22 22 H 1.08998 * 109.47119 * 60.00232 * 1 2 3 23 23 H 1.09001 * 109.46813 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47130 * 240.00437 * 2 1 3 25 25 H 1.08999 * 109.47549 * 120.00405 * 2 1 3 26 26 H 1.08996 * 109.47459 * 59.99297 * 5 3 2 27 27 H 1.09001 * 109.47599 * 180.02562 * 5 3 2 28 28 H 1.09009 * 109.46857 * 300.00068 * 5 3 2 29 29 H 1.08003 * 120.83519 * 359.70410 * 7 6 3 30 30 H 0.96991 * 120.00381 * 179.97438 * 9 8 7 31 31 H 0.96994 * 119.99535 * 180.02562 * 13 12 10 32 32 H 1.08006 * 119.07338 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 6 4.3363 1.3068 0.9983 8 6 5.7231 1.3085 0.8328 9 7 6.5627 1.1742 1.9264 10 6 6.0345 1.0379 3.1824 11 1 4.9633 1.0354 3.3204 12 6 6.8760 0.9027 4.2785 13 7 8.1806 0.9062 4.1104 14 14 6.1554 0.7175 5.9919 15 1 5.9469 -0.7227 6.2881 16 1 7.0919 1.2971 6.9880 17 1 4.8548 1.4307 6.0617 18 7 6.2248 1.4422 -0.3924 19 6 5.4293 1.5705 -1.4342 20 7 4.1168 1.5717 -1.3112 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.0698 1.5875 2.1491 27 1 1.9982 3.1543 1.3072 28 1 0.5489 2.1252 1.3969 29 1 3.8958 1.2010 1.9788 30 1 7.5246 1.1760 1.8024 31 1 8.7684 0.8115 4.8761 32 1 5.8645 1.6769 -2.4169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = 10.845701 kcal Electronic energy + Delta-G solvation = -14750.799271 eV Core-core repulsion = 12323.927556 eV Total energy + Delta-G solvation = -2426.871715 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51347 -37.93473 -37.11953 -34.28672 -33.04190 -31.37851 -29.68428 -27.13288 -26.31617 -24.31477 -23.24659 -21.08424 -20.04603 -18.45213 -17.77785 -16.50021 -15.97395 -15.94748 -15.63214 -15.46762 -15.08038 -14.77713 -14.30913 -13.52964 -13.44933 -13.24508 -12.90907 -12.63237 -12.52119 -12.48082 -12.11682 -11.95537 -11.77778 -11.52412 -11.08989 -11.00559 -10.41580 -9.78167 -9.22691 -8.59816 -5.93858 0.51373 0.72237 1.40944 1.48746 1.54788 2.19050 2.87774 2.97700 3.38835 3.43393 3.77500 4.07006 4.17157 4.29529 4.47769 4.59356 4.67936 4.71234 4.80991 4.92979 5.04120 5.16624 5.18590 5.21640 5.24559 5.26768 5.51688 5.55102 5.65689 6.01033 6.37746 6.73452 7.26401 7.36171 7.82672 8.58137 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.008582 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.974546 B = 3262.012596 C = 4135.992742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.034 4.034 4 H 0.092 0.908 5 C -0.142 4.142 6 C 0.195 3.805 7 C -0.314 4.314 8 C 0.363 3.637 9 N -0.538 5.538 10 C -0.327 4.327 11 H 0.112 0.888 12 C -0.019 4.019 13 N -0.920 5.920 14 Si 1.005 2.995 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.254 1.254 18 N -0.633 5.633 19 C 0.325 3.675 20 N -0.612 5.612 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.133 0.867 30 H 0.394 0.606 31 H 0.280 0.720 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 -0.199 -2.982 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.053 4.053 4 H 0.110 0.890 5 C -0.199 4.199 6 C 0.055 3.945 7 C -0.345 4.345 8 C 0.115 3.885 9 N -0.146 5.146 10 C -0.457 4.457 11 H 0.130 0.870 12 C -0.221 4.221 13 N -0.557 5.557 14 Si 0.827 3.173 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.178 1.178 18 N -0.363 5.363 19 C 0.034 3.966 20 N -0.337 5.337 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.228 0.772 31 H 0.090 0.910 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -12.119 -0.150 -3.388 12.585 hybrid contribution 0.753 -0.181 1.421 1.618 sum -11.366 -0.331 -1.967 11.540 Atomic orbital electron populations 1.21773 0.93106 1.02423 1.02773 1.21459 0.97690 0.94107 1.01368 1.20110 0.86812 0.98228 1.00132 0.89014 1.21900 1.02650 0.99734 0.95653 1.21599 0.97291 0.88051 0.87541 1.21709 0.92463 1.18963 1.01348 1.18868 0.89437 0.93302 0.86870 1.40837 1.07406 1.62907 1.03454 1.20095 0.94772 1.48717 0.82130 0.87008 1.26361 0.95364 0.95924 1.04403 1.69797 1.03784 1.48082 1.34056 0.84734 0.78481 0.78949 0.75153 1.19422 1.20318 1.17752 1.67836 1.42219 1.27285 0.98987 1.24877 0.85916 0.88746 0.97102 1.68190 1.12927 1.26058 1.26545 0.91353 0.91894 0.91908 0.93101 0.92752 0.92898 0.93416 0.89190 0.84981 0.77241 0.91009 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.67 71.98 0.70 -1.97 16 2 C -0.11 -2.79 5.38 30.59 0.16 -2.63 16 3 C -0.03 -0.98 2.73 -11.54 -0.03 -1.01 16 4 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 5 C -0.14 -3.65 8.39 71.98 0.60 -3.04 16 6 C 0.19 7.51 5.82 42.44 0.25 7.75 16 7 C -0.31 -13.75 8.48 22.60 0.19 -13.56 16 8 C 0.36 17.86 7.68 133.16 1.02 18.88 16 9 N -0.54 -28.39 5.43 -188.66 -1.02 -29.41 16 10 C -0.33 -16.95 9.56 84.04 0.80 -16.14 16 11 H 0.11 5.45 5.73 -2.91 -0.02 5.43 16 12 C -0.02 -0.97 5.50 84.88 0.47 -0.50 16 13 N -0.92 -49.69 13.05 21.65 0.28 -49.41 16 14 Si 1.01 39.26 29.55 68.60 2.03 41.29 16 15 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 16 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 17 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 18 N -0.63 -29.56 10.47 -197.54 -2.07 -31.63 16 19 C 0.32 12.94 12.28 180.90 2.22 15.17 16 20 N -0.61 -24.24 10.37 -188.30 -1.95 -26.19 16 21 H 0.07 1.13 6.56 -2.39 -0.02 1.11 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.46 6.57 -2.39 -0.02 1.45 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.73 6.57 -2.38 -0.02 1.72 16 29 H 0.13 5.63 4.44 -2.91 -0.01 5.62 16 30 H 0.39 21.83 8.02 -92.71 -0.74 21.08 16 31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.21 6.47 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -59.58 268.81 4.04 -55.54 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.39 Total: 36.88 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.39 Total: 2.94 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -4.76 Total: -136.64 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -59.58 4.04 -55.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.387 kcal (2) G-P(sol) polarization free energy of solvation -59.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds