Wall clock time and date at job start Mon Mar 30 2020 07:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 H 1.08998 * 109.46877 * 304.99797 * 3 2 1 5 5 C 1.52998 * 109.47180 * 64.99777 * 3 2 1 6 6 C 1.50700 * 109.46908 * 184.99915 * 3 2 1 7 7 C 1.38125 * 120.39692 * 274.99884 * 6 3 2 8 8 C 1.39630 * 118.32829 * 180.02562 * 7 6 3 9 9 N 1.38544 * 120.52691 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00121 * 5.00252 * 9 8 7 11 11 C 1.46499 * 119.99434 * 184.99776 * 9 8 7 12 12 C 1.50707 * 109.47036 * 90.00513 * 11 9 8 13 13 H 1.08003 * 119.99761 * 359.97438 * 12 11 9 14 14 C 1.37870 * 120.00150 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99816 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00275 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47413 * 59.99331 * 16 14 12 18 18 H 1.48494 * 109.47483 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46782 * 299.99990 * 16 14 12 20 20 N 1.32990 * 118.93581 * 0.02562 * 8 7 6 21 21 C 1.31744 * 120.69004 * 359.95287 * 20 8 7 22 22 N 1.31791 * 121.83456 * 0.05033 * 21 20 8 23 23 H 1.08996 * 109.47341 * 300.00149 * 1 2 3 24 24 H 1.09002 * 109.47141 * 60.00683 * 1 2 3 25 25 H 1.09002 * 109.46943 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47341 * 239.99851 * 2 1 3 27 27 H 1.09006 * 109.47064 * 119.99826 * 2 1 3 28 28 H 1.08993 * 109.47146 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47258 * 299.99873 * 5 3 2 30 30 H 1.09002 * 109.46827 * 59.99894 * 5 3 2 31 31 H 1.07990 * 120.83395 * 359.74912 * 7 6 3 32 32 H 1.08999 * 109.47416 * 89.99769 * 10 9 8 33 33 H 1.09001 * 109.47083 * 210.00269 * 10 9 8 34 34 H 1.09000 * 109.46927 * 329.99872 * 10 9 8 35 35 H 1.08999 * 109.46996 * 210.00024 * 11 9 8 36 36 H 1.08996 * 109.47644 * 330.00427 * 11 9 8 37 37 H 0.97000 * 119.99920 * 179.97438 * 15 14 12 38 38 H 1.08007 * 119.08508 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 6 4.3358 1.3069 0.9981 8 6 5.7224 1.3150 0.8336 9 7 6.5616 1.1810 1.9278 10 6 5.9989 0.9197 3.2549 11 6 8.0117 1.3005 1.7575 12 6 8.4217 2.7395 1.9373 13 1 7.6765 3.4900 2.1562 14 6 9.7481 3.0980 1.8225 15 7 10.6556 2.1840 1.5566 16 14 10.2564 4.8814 2.0462 17 1 9.8782 5.3370 3.4080 18 1 11.7264 5.0025 1.8747 19 1 9.5685 5.7228 1.0341 20 7 6.2244 1.4544 -0.3900 21 6 5.4291 1.5821 -1.4325 22 7 4.1169 1.5784 -1.3105 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.9988 3.1540 1.3075 29 1 0.5489 2.1253 1.3968 30 1 2.0698 1.5875 2.1491 31 1 3.8952 1.2005 1.9783 32 1 5.9225 -0.1562 3.4118 33 1 6.6476 1.3528 4.0163 34 1 5.0079 1.3683 3.3240 35 1 8.5169 0.6833 2.5004 36 1 8.2890 0.9659 0.7579 37 1 11.5887 2.4362 1.4754 38 1 5.8647 1.6933 -2.4146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:26 Heat of formation + Delta-G solvation = 21.437174 kcal Electronic energy + Delta-G solvation = -18159.576891 eV Core-core repulsion = 15422.089219 eV Total energy + Delta-G solvation = -2737.487672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.85067 -38.30661 -37.29738 -34.87188 -33.53132 -32.22636 -30.27644 -29.47818 -27.32901 -26.42623 -24.85817 -24.30158 -22.48892 -20.79959 -18.73280 -18.36012 -18.15945 -16.61941 -16.30347 -16.13474 -15.85707 -15.52148 -15.30858 -14.90883 -14.70547 -14.26819 -13.97905 -13.42443 -13.31782 -13.14053 -12.92245 -12.79230 -12.59377 -12.51767 -12.19279 -12.17731 -11.99926 -11.77230 -11.55016 -11.34256 -11.23687 -10.62974 -10.51758 -9.91212 -8.74735 -8.15427 -6.35487 0.26744 0.58201 1.35956 1.38768 1.46593 2.17472 2.39931 3.07847 3.08544 3.23698 3.52242 3.84929 4.04609 4.13658 4.22016 4.33661 4.42013 4.53966 4.62753 4.68326 4.71292 4.80059 4.85902 4.90963 5.00490 5.09911 5.17274 5.18487 5.22043 5.26153 5.46969 5.54352 5.58950 5.69546 5.95856 6.08825 6.40556 6.69947 6.77181 7.33254 7.55178 8.85122 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.005109 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.574071 B = 5479.080930 C = 5611.793415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.036 4.036 4 H 0.089 0.911 5 C -0.144 4.144 6 C 0.197 3.803 7 C -0.300 4.300 8 C 0.422 3.578 9 N -0.595 5.595 10 C 0.092 3.908 11 C 0.269 3.731 12 C -0.538 4.538 13 H 0.046 0.954 14 C 0.013 3.987 15 N -0.926 5.926 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.279 1.279 20 N -0.607 5.607 21 C 0.324 3.676 22 N -0.586 5.586 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.267 0.733 38 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.117 -2.849 0.863 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.055 4.055 4 H 0.107 0.893 5 C -0.201 4.201 6 C 0.055 3.945 7 C -0.328 4.328 8 C 0.179 3.821 9 N -0.304 5.304 10 C -0.050 4.050 11 C 0.147 3.853 12 C -0.577 4.577 13 H 0.064 0.936 14 C -0.186 4.186 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.204 1.204 20 N -0.332 5.332 21 C 0.034 3.966 22 N -0.307 5.307 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.370 -2.817 0.205 18.586 hybrid contribution 0.887 0.728 0.612 1.300 sum -17.483 -2.089 0.817 17.627 Atomic orbital electron populations 1.21788 0.93380 1.02427 1.02739 1.21470 0.97515 0.93772 1.01817 1.20182 0.86021 0.98603 1.00698 0.89291 1.21929 1.02973 0.99798 0.95397 1.21813 0.97824 0.87533 0.87336 1.22097 0.91592 1.16529 1.02629 1.18995 0.88809 0.87169 0.87142 1.46975 1.06620 1.71286 1.05503 1.21848 0.99880 1.01248 0.82012 1.18794 0.74822 0.95471 0.96184 1.21604 0.92834 0.94387 1.48827 0.93605 1.25749 0.96353 1.01906 0.94612 1.70034 1.02010 1.35192 1.49307 0.85545 0.77219 0.79585 0.78898 1.18962 1.20251 1.20418 1.68053 1.42458 1.23068 0.99600 1.24998 0.85628 0.88603 0.97372 1.68258 1.12842 1.22268 1.27334 0.91068 0.92386 0.91946 0.93278 0.91625 0.93408 0.89272 0.91620 0.82097 0.91609 0.91113 0.89494 0.96679 0.96605 0.92416 0.77692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 71.98 0.70 -1.27 16 2 C -0.11 -2.04 5.38 30.59 0.16 -1.87 16 3 C -0.04 -0.79 2.73 -11.54 -0.03 -0.82 16 4 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.14 -2.52 8.39 71.98 0.60 -1.92 16 6 C 0.20 6.18 5.82 42.42 0.25 6.42 16 7 C -0.30 -10.01 8.42 22.58 0.19 -9.82 16 8 C 0.42 17.91 7.39 133.16 0.98 18.89 16 9 N -0.59 -26.01 2.96 -732.65 -2.17 -28.18 16 10 C 0.09 2.96 10.31 127.77 1.32 4.28 16 11 C 0.27 14.44 5.23 85.64 0.45 14.89 16 12 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 13 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.93 -55.51 13.29 21.44 0.28 -55.23 16 16 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 N -0.61 -27.67 9.23 -197.61 -1.82 -29.49 16 21 C 0.32 12.36 12.28 180.90 2.22 14.58 16 22 N -0.59 -20.63 10.37 -188.33 -1.95 -22.58 16 23 H 0.07 0.78 6.56 -2.39 -0.02 0.76 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.12 6.56 -2.39 -0.02 1.10 16 30 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 31 H 0.16 4.31 4.52 -2.92 -0.01 4.29 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 34 H 0.09 2.25 6.04 -2.39 -0.01 2.23 16 35 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 36 H 0.02 0.96 7.33 -2.39 -0.02 0.94 16 37 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.21 6.50 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -69.27 312.09 4.95 -64.32 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.04 Total: 10.29 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 7.54 Total: 13.97 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -5.66 Total: -135.48 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.27 4.95 -64.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.761 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds