Wall clock time and date at job start Mon Mar 30 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47241 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.47178 * 29.99697 * 3 2 1 6 6 H 1.48497 * 109.47606 * 150.00036 * 3 2 1 7 7 C 1.38855 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36924 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.38580 * 119.99558 * 179.97438 * 9 7 2 11 11 C 1.39325 * 120.48782 * 0.02562 * 10 9 7 12 12 C 1.39467 * 118.20454 * 179.97438 * 11 10 9 13 13 C 1.48086 * 120.51701 * 179.97438 * 12 11 10 14 14 C 1.39645 * 122.86504 * 180.02562 * 13 12 11 15 15 C 1.33124 * 113.74596 * 179.97438 * 14 13 12 16 16 S 1.75741 * 109.77170 * 359.97438 * 15 14 13 17 17 C 1.34559 * 122.86728 * 359.70151 * 13 12 11 18 18 N 1.33463 * 118.96290 * 0.24942 * 12 11 10 19 19 C 1.31676 * 120.86568 * 359.48564 * 18 12 11 20 20 N 1.31747 * 121.98405 * 0.53364 * 19 18 12 21 21 H 0.96999 * 120.00250 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00266 * 0.02562 * 9 7 2 23 23 H 1.07994 * 120.89555 * 359.94979 * 11 10 9 24 24 H 1.07999 * 123.12821 * 359.97438 * 14 13 12 25 25 H 1.07997 * 125.11965 * 179.97438 * 15 14 13 26 26 H 1.08004 * 124.73870 * 0.02562 * 17 13 12 27 27 H 1.08002 * 119.00596 * 180.24110 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0096 -1.2025 0.0005 8 1 3.0896 -1.2024 0.0001 9 7 1.3250 -2.3883 0.0005 10 6 2.0179 -3.5884 0.0005 11 6 3.4111 -3.6002 0.0011 12 6 4.0599 -4.8348 0.0016 13 6 5.5390 -4.9070 0.0016 14 6 6.2386 -6.1155 0.0016 15 6 7.5618 -5.9690 0.0011 16 16 7.9705 -4.2597 -0.0002 17 6 6.3235 -3.8138 -0.0048 18 7 3.3268 -5.9500 -0.0035 19 6 2.0113 -5.8937 0.0012 20 7 1.3618 -4.7475 0.0006 21 1 -0.4850 0.8400 0.0004 22 1 0.3550 -2.3883 -0.0002 23 1 3.9735 -2.6782 0.0007 24 1 5.7516 -7.0795 0.0020 25 1 8.2766 -6.7785 0.0014 26 1 5.9612 -2.7964 -0.0100 27 1 1.4477 -6.8151 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959945.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:24 Heat of formation + Delta-G solvation = 78.834041 kcal Electronic energy + Delta-G solvation = -14603.626494 eV Core-core repulsion = 12067.025897 eV Total energy + Delta-G solvation = -2536.600597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79321 -37.60187 -35.71967 -32.61341 -31.80526 -29.98280 -28.40395 -25.33622 -24.84735 -22.35188 -21.76399 -18.96504 -18.28020 -17.61188 -16.86786 -15.55192 -15.12056 -14.35554 -14.31395 -13.97168 -13.72036 -13.38322 -12.89606 -12.77420 -12.18312 -12.03224 -11.80047 -11.62373 -10.93067 -10.77966 -10.74230 -10.54564 -9.66841 -9.51250 -9.07739 -8.65610 -8.13791 -7.89386 -7.43338 -6.79316 -4.04467 1.03009 1.82234 1.99829 2.15902 2.35310 3.03326 3.04983 3.08418 3.34282 3.84431 4.68927 4.69436 4.97582 5.09513 5.20091 5.38064 5.54741 5.78278 5.98365 6.14407 6.30450 6.44709 6.50936 6.69185 6.85276 7.07816 7.37291 7.66418 8.07625 8.54684 9.03588 9.14769 9.56311 10.36234 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.006715 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.452791 B = 4168.834225 C = 5422.443975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.029 3.971 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.511 5.511 10 C 0.376 3.624 11 C -0.286 4.286 12 C 0.235 3.765 13 C -0.051 4.051 14 C -0.092 4.092 15 C -0.243 4.243 16 S 0.142 5.858 17 C -0.227 4.227 18 N -0.608 5.608 19 C 0.334 3.666 20 N -0.611 5.611 21 H 0.280 0.720 22 H 0.406 0.594 23 H 0.129 0.871 24 H 0.151 0.849 25 H 0.162 0.838 26 H 0.168 0.832 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -5.459 0.014 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.177 4.177 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.439 4.439 8 H 0.123 0.877 9 N -0.118 5.118 10 C 0.127 3.873 11 C -0.318 4.318 12 C 0.096 3.904 13 C -0.065 4.065 14 C -0.122 4.122 15 C -0.378 4.378 16 S 0.406 5.594 17 C -0.365 4.365 18 N -0.334 5.334 19 C 0.041 3.959 20 N -0.341 5.341 21 H 0.090 0.910 22 H 0.243 0.757 23 H 0.146 0.854 24 H 0.169 0.831 25 H 0.180 0.820 26 H 0.186 0.814 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.411 -4.952 0.014 13.362 hybrid contribution -1.175 0.891 -0.007 1.475 sum 11.236 -4.060 0.007 11.947 Atomic orbital electron populations 1.69679 1.06176 1.29224 1.46069 1.25413 0.95797 1.00223 0.96291 0.85737 0.79196 0.79951 0.78820 1.19858 1.20358 1.19021 1.19766 0.93143 0.82011 1.49030 0.87681 1.40815 1.08970 1.01130 1.60906 1.18248 0.88437 0.86303 0.94323 1.21671 0.94358 0.98437 1.17346 1.19067 0.90737 0.88876 0.91726 1.17663 0.92197 0.92095 1.04544 1.20318 0.92401 0.99559 0.99901 1.25546 0.99533 0.99275 1.13471 1.82883 1.04895 1.00208 1.71386 1.25140 0.97782 1.03717 1.09865 1.68220 1.07796 1.30555 1.26871 1.24030 0.87386 0.94483 0.89970 1.67772 1.41490 0.97899 1.26960 0.90976 0.75737 0.85358 0.83121 0.82011 0.81437 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.70 13.05 55.49 0.72 -21.98 15 2 C 0.03 0.72 5.50 -17.45 -0.10 0.62 15 3 Si 0.94 18.91 29.55 -169.99 -5.02 13.88 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 7 C -0.31 -7.72 9.56 -15.05 -0.14 -7.86 15 8 H 0.11 2.49 5.73 -52.48 -0.30 2.19 15 9 N -0.51 -12.89 5.43 -11.03 -0.06 -12.95 15 10 C 0.38 9.02 7.67 -154.68 -1.19 7.83 15 11 C -0.29 -6.34 8.81 -38.72 -0.34 -6.68 15 12 C 0.23 4.84 6.78 -82.66 -0.56 4.28 15 13 C -0.05 -0.89 5.80 -106.63 -0.62 -1.50 15 14 C -0.09 -1.38 9.83 -40.84 -0.40 -1.78 15 15 C -0.24 -3.00 11.20 28.95 0.32 -2.67 15 16 S 0.14 1.71 23.09 -107.50 -2.48 -0.77 15 17 C -0.23 -3.49 10.26 29.43 0.30 -3.19 15 18 N -0.61 -12.44 9.97 -11.19 -0.11 -12.55 15 19 C 0.33 6.74 12.28 -92.30 -1.13 5.60 15 20 N -0.61 -14.00 10.46 -13.86 -0.15 -14.15 15 21 H 0.28 6.79 8.31 -40.82 -0.34 6.45 15 22 H 0.41 10.57 8.02 -40.82 -0.33 10.24 15 23 H 0.13 2.72 4.72 -52.49 -0.25 2.47 15 24 H 0.15 2.21 7.96 -52.49 -0.42 1.79 15 25 H 0.16 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.17 2.49 6.84 -52.48 -0.36 2.13 15 27 H 0.18 2.80 8.06 -52.49 -0.42 2.37 15 LS Contribution 258.24 15.07 3.89 3.89 Total: -1.00 -27.60 258.24 -8.69 -36.29 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -1.63 Total: 13.68 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.85 Total: -5.35 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.41 Total: -61.62 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.48 Total: -0.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.60 -8.69 -36.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959945.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.123 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds