Wall clock time and date at job start Mon Mar 30 2020 07:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47241 * 270.00174 * 3 2 1 5 5 H 1.48506 * 109.47178 * 29.99697 * 3 2 1 6 6 H 1.48497 * 109.47606 * 150.00036 * 3 2 1 7 7 C 1.38855 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36924 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.38580 * 119.99558 * 179.97438 * 9 7 2 11 11 C 1.39325 * 120.48782 * 0.02562 * 10 9 7 12 12 C 1.39467 * 118.20454 * 179.97438 * 11 10 9 13 13 C 1.48086 * 120.51701 * 179.97438 * 12 11 10 14 14 C 1.39645 * 122.86504 * 180.02562 * 13 12 11 15 15 C 1.33124 * 113.74596 * 179.97438 * 14 13 12 16 16 S 1.75741 * 109.77170 * 359.97438 * 15 14 13 17 17 C 1.34559 * 122.86728 * 359.70151 * 13 12 11 18 18 N 1.33463 * 118.96290 * 0.24942 * 12 11 10 19 19 C 1.31676 * 120.86568 * 359.48564 * 18 12 11 20 20 N 1.31747 * 121.98405 * 0.53364 * 19 18 12 21 21 H 0.96999 * 120.00250 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00266 * 0.02562 * 9 7 2 23 23 H 1.07994 * 120.89555 * 359.94979 * 11 10 9 24 24 H 1.07999 * 123.12821 * 359.97438 * 14 13 12 25 25 H 1.07997 * 125.11965 * 179.97438 * 15 14 13 26 26 H 1.08004 * 124.73870 * 0.02562 * 17 13 12 27 27 H 1.08002 * 119.00596 * 180.24110 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4403 0.7000 7 6 2.0096 -1.2025 0.0005 8 1 3.0896 -1.2024 0.0001 9 7 1.3250 -2.3883 0.0005 10 6 2.0179 -3.5884 0.0005 11 6 3.4111 -3.6002 0.0011 12 6 4.0599 -4.8348 0.0016 13 6 5.5390 -4.9070 0.0016 14 6 6.2386 -6.1155 0.0016 15 6 7.5618 -5.9690 0.0011 16 16 7.9705 -4.2597 -0.0002 17 6 6.3235 -3.8138 -0.0048 18 7 3.3268 -5.9500 -0.0035 19 6 2.0113 -5.8937 0.0012 20 7 1.3618 -4.7475 0.0006 21 1 -0.4850 0.8400 0.0004 22 1 0.3550 -2.3883 -0.0002 23 1 3.9735 -2.6782 0.0007 24 1 5.7516 -7.0795 0.0020 25 1 8.2766 -6.7785 0.0014 26 1 5.9612 -2.7964 -0.0100 27 1 1.4477 -6.8151 0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959945.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:24 Heat of formation + Delta-G solvation = 63.497453 kcal Electronic energy + Delta-G solvation = -14604.291539 eV Core-core repulsion = 12067.025897 eV Total energy + Delta-G solvation = -2537.265641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.45661 -38.87253 -37.47825 -34.37950 -33.42800 -31.57854 -29.78448 -27.14906 -26.28601 -23.98654 -23.18602 -20.34258 -19.98718 -18.92950 -18.44283 -17.09022 -16.66797 -16.03305 -15.75924 -15.65080 -15.45367 -14.94527 -14.18499 -13.96138 -13.54711 -13.37275 -13.31839 -13.25010 -12.60218 -12.54156 -12.12624 -11.79686 -11.28270 -11.23915 -10.79243 -9.86094 -9.75189 -9.35491 -8.99269 -8.61863 -5.95812 -0.25475 0.55210 0.69041 0.77571 1.07369 1.40207 1.47035 1.53916 1.97753 2.17439 2.90283 2.93521 3.45571 3.48860 3.73192 4.13582 4.24722 4.50907 4.57567 4.62622 4.87527 4.94394 5.12084 5.22498 5.41781 5.55762 5.63589 5.94805 6.32660 6.69964 7.22701 7.31937 7.78552 8.55855 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.006715 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.452791 B = 4168.834225 C = 5422.443975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.018 4.018 3 Si 1.006 2.994 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.329 4.329 8 H 0.112 0.888 9 N -0.535 5.535 10 C 0.367 3.633 11 C -0.310 4.310 12 C 0.241 3.759 13 C -0.086 4.086 14 C -0.116 4.116 15 C -0.228 4.228 16 S 0.221 5.779 17 C -0.242 4.242 18 N -0.603 5.603 19 C 0.331 3.669 20 N -0.632 5.632 21 H 0.281 0.719 22 H 0.396 0.604 23 H 0.132 0.868 24 H 0.149 0.851 25 H 0.199 0.801 26 H 0.165 0.835 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.782 -6.157 0.026 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.219 4.219 3 Si 0.828 3.172 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.459 4.459 8 H 0.129 0.871 9 N -0.143 5.143 10 C 0.120 3.880 11 C -0.342 4.342 12 C 0.101 3.899 13 C -0.101 4.101 14 C -0.145 4.145 15 C -0.363 4.363 16 S 0.487 5.513 17 C -0.380 4.380 18 N -0.329 5.329 19 C 0.039 3.961 20 N -0.363 5.363 21 H 0.091 0.909 22 H 0.230 0.770 23 H 0.149 0.851 24 H 0.167 0.833 25 H 0.216 0.784 26 H 0.183 0.817 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 15.552 -5.697 0.026 16.563 hybrid contribution -1.936 0.864 -0.013 2.120 sum 13.616 -4.833 0.013 14.449 Atomic orbital electron populations 1.69787 1.07694 1.30002 1.47953 1.26366 0.96561 1.03319 0.95675 0.84720 0.78165 0.75424 0.78905 1.19385 1.20232 1.17844 1.20088 0.93582 0.82461 1.49778 0.87086 1.40852 1.08371 1.01708 1.63350 1.18644 0.89363 0.86471 0.93531 1.21772 0.93706 0.99502 1.19199 1.19622 0.92778 0.88157 0.89298 1.17732 0.90521 0.93991 1.07849 1.20268 0.93475 0.98616 1.02150 1.26001 0.99096 1.00810 1.10377 1.82668 1.01017 0.99084 1.68564 1.25398 1.00380 1.03390 1.08879 1.68368 1.07897 1.30476 1.26114 1.24904 0.87780 0.95072 0.88308 1.67838 1.42233 0.98356 1.27823 0.90904 0.77017 0.85066 0.83340 0.78423 0.81727 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.05 21.65 0.28 -48.96 15 2 C -0.02 -0.88 5.50 84.89 0.47 -0.41 15 3 Si 1.01 39.09 29.55 68.60 2.03 41.11 15 4 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.28 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 15 7 C -0.33 -17.01 9.56 84.05 0.80 -16.21 15 8 H 0.11 5.40 5.73 -2.91 -0.02 5.38 15 9 N -0.53 -28.16 5.43 -188.80 -1.03 -29.19 15 10 C 0.37 18.17 7.67 133.02 1.02 19.19 15 11 C -0.31 -14.02 8.81 22.83 0.20 -13.82 15 12 C 0.24 9.91 6.78 41.81 0.28 10.19 15 13 C -0.09 -2.89 5.80 -21.17 -0.12 -3.01 15 14 C -0.12 -3.23 9.83 21.46 0.21 -3.02 15 15 C -0.23 -4.68 11.20 66.67 0.75 -3.93 15 16 S 0.22 4.48 23.09 -56.49 -1.30 3.18 15 17 C -0.24 -7.00 10.26 66.98 0.69 -6.32 15 18 N -0.60 -24.25 9.97 -189.33 -1.89 -26.14 15 19 C 0.33 13.12 12.28 180.93 2.22 15.35 15 20 N -0.63 -29.40 10.46 -197.77 -2.07 -31.47 15 21 H 0.28 14.09 8.31 -92.71 -0.77 13.32 15 22 H 0.40 21.78 8.02 -92.71 -0.74 21.03 15 23 H 0.13 5.71 4.72 -2.91 -0.01 5.70 15 24 H 0.15 4.09 7.96 -2.91 -0.02 4.07 15 25 H 0.20 2.59 8.06 -2.91 -0.02 2.56 15 26 H 0.17 4.76 6.84 -2.91 -0.02 4.74 15 27 H 0.22 6.47 8.06 -2.91 -0.02 6.45 15 Total: -1.00 -61.16 258.24 3.03 -58.13 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.49 Total: 35.33 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.52 Total: -2.00 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -4.70 Total: -135.75 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.11 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.30 Total: 3.18 kcal Total: -61.16 3.03 -58.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959945.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.627 kcal (2) G-P(sol) polarization free energy of solvation -61.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds