Wall clock time and date at job start Mon Mar 30 2020 07:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.42898 * 113.99824 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47357 * 180.02562 * 4 3 2 6 6 C 1.38118 * 120.39823 * 359.97438 * 5 4 3 7 7 C 1.39627 * 118.33708 * 180.02562 * 6 5 4 8 8 N 1.38536 * 120.53463 * 179.97438 * 7 6 5 9 9 C 1.46505 * 120.00177 * 184.99626 * 8 7 6 10 10 C 1.46500 * 120.00235 * 4.99514 * 8 7 6 11 11 C 1.50703 * 109.47138 * 89.99842 * 10 8 7 12 12 H 1.08006 * 119.99667 * 0.02562 * 11 10 8 13 13 C 1.37870 * 119.99948 * 180.02562 * 11 10 8 14 14 N 1.31518 * 120.00123 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00134 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47185 * 89.99769 * 15 13 11 17 17 H 1.48495 * 109.47629 * 209.99790 * 15 13 11 18 18 H 1.48507 * 109.46976 * 330.00549 * 15 13 11 19 19 N 1.33000 * 118.92941 * 359.97438 * 7 6 5 20 20 C 1.31744 * 120.69117 * 0.02562 * 19 7 6 21 21 N 1.31789 * 121.83096 * 359.71606 * 20 19 7 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 25 25 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 26 26 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 27 27 H 1.09008 * 109.46688 * 300.00244 * 4 3 2 28 28 H 1.09002 * 109.47367 * 59.99723 * 4 3 2 29 29 H 1.07998 * 120.83254 * 359.97438 * 6 5 4 30 30 H 1.09002 * 109.46940 * 89.99364 * 9 8 7 31 31 H 1.08991 * 109.47042 * 209.99642 * 9 8 7 32 32 H 1.08998 * 109.46647 * 330.00209 * 9 8 7 33 33 H 1.08994 * 109.47398 * 210.00295 * 10 8 7 34 34 H 1.09008 * 109.46993 * 330.00128 * 10 8 7 35 35 H 0.97004 * 119.99898 * 179.97438 * 14 13 11 36 36 H 1.07995 * 119.08388 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 0.0001 6 6 2.8486 3.8987 0.0006 7 6 3.2569 5.2339 0.0007 8 7 2.3217 6.2559 0.0006 9 6 2.7596 7.6496 -0.1098 10 6 0.8947 5.9431 0.1110 11 6 0.4966 5.9193 1.5643 12 1 1.2328 6.1178 2.3292 13 6 -0.8074 5.6441 1.9173 14 7 -1.7038 5.4019 0.9859 15 14 -1.3011 5.6153 3.7187 16 1 -1.7367 6.9728 4.1344 17 1 -2.4188 4.6566 3.9104 18 1 -0.1403 5.1938 4.5434 19 7 4.5582 5.5087 0.0008 20 6 5.4502 4.5392 0.0003 21 7 5.0969 3.2696 0.0053 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.8340 0.9765 0.8892 28 1 3.8333 0.9768 -0.8908 29 1 1.7999 3.6406 0.0001 30 1 2.8023 7.9348 -1.1610 31 1 2.0538 8.2947 0.4133 32 1 3.7485 7.7561 0.3360 33 1 0.3146 6.7031 -0.4123 34 1 0.7011 4.9674 -0.3348 35 1 -2.6212 5.2080 1.2344 36 1 6.5002 4.7919 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:54 Heat of formation + Delta-G solvation = -11.240341 kcal Electronic energy + Delta-G solvation = -18493.044172 eV Core-core repulsion = 15590.994923 eV Total energy + Delta-G solvation = -2902.049249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.80254 -39.05219 -38.03880 -35.05725 -34.29583 -32.58483 -31.71322 -29.94240 -28.34198 -26.62202 -25.57440 -23.98529 -23.54377 -21.88801 -18.73664 -18.63803 -18.19876 -17.23267 -17.18136 -16.68138 -16.04437 -16.03661 -15.68839 -15.23385 -15.03818 -14.82516 -14.31874 -13.98114 -13.43977 -13.29041 -13.17139 -13.03230 -12.77198 -12.61707 -12.53555 -12.24252 -12.09361 -12.01125 -11.51049 -11.38309 -10.81842 -10.65070 -10.38362 -10.09436 -8.76125 -8.18811 -6.40057 0.22432 0.47852 1.36171 1.37387 1.47899 2.11235 2.37795 2.43877 3.02122 3.04649 3.49037 3.59177 3.87867 4.13123 4.19177 4.36607 4.44460 4.46932 4.50739 4.53680 4.64182 4.66545 4.81341 4.89154 4.92374 5.00590 5.04548 5.15325 5.29931 5.50787 5.59966 5.87490 5.99619 6.27526 6.46081 6.55379 6.73124 7.29162 7.41381 8.81036 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.009226 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.230204 B = 3034.074486 C = 4625.108217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.412 6.412 4 C 0.122 3.878 5 C 0.183 3.817 6 C -0.279 4.279 7 C 0.426 3.574 8 N -0.590 5.590 9 C 0.101 3.899 10 C 0.266 3.734 11 C -0.547 4.547 12 H 0.046 0.954 13 C 0.021 3.979 14 N -0.918 5.918 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.276 1.276 19 N -0.600 5.600 20 C 0.330 3.670 21 N -0.577 5.577 22 H 0.100 0.900 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -7.819 -2.369 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.332 6.332 4 C 0.045 3.955 5 C 0.043 3.957 6 C -0.308 4.308 7 C 0.182 3.818 8 N -0.299 5.299 9 C -0.041 4.041 10 C 0.145 3.855 11 C -0.586 4.586 12 H 0.064 0.936 13 C -0.179 4.179 14 N -0.557 5.557 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.201 1.201 19 N -0.327 5.327 20 C 0.041 3.959 21 N -0.300 5.300 22 H 0.119 0.881 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.068 -7.306 -2.405 11.890 hybrid contribution -1.440 -0.114 0.839 1.670 sum 7.628 -7.420 -1.566 10.756 Atomic orbital electron populations 1.21782 0.93920 1.03304 1.01977 1.22687 0.95588 0.82092 1.01730 1.87968 1.20574 1.28917 1.95748 1.20944 0.81637 0.89593 1.03313 1.21247 0.88513 0.96227 0.89745 1.21964 1.02711 0.92553 1.13524 1.18831 0.87989 0.87901 0.87031 1.46973 1.05584 1.04814 1.72539 1.21593 1.00905 0.80459 1.01164 1.19017 0.74416 0.96057 0.96036 1.21614 0.94882 1.49357 0.92753 0.93556 1.25677 0.96130 0.94192 1.01925 1.70017 1.03547 1.47636 1.34475 0.85536 0.77819 0.78451 0.79751 1.19405 1.20107 1.20113 1.67974 1.00220 1.39336 1.25177 1.25266 1.00286 0.82538 0.87835 1.68021 1.17674 1.21582 1.22723 0.88110 0.93829 0.93118 0.91691 0.91096 0.89268 0.88652 0.85328 0.92517 0.91561 0.90384 0.95656 0.96244 0.92194 0.75210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.28 71.98 0.74 -3.08 16 2 C 0.05 1.32 6.66 71.98 0.48 1.80 16 3 O -0.41 -13.87 8.89 -148.98 -1.33 -15.19 16 4 C 0.12 3.58 6.50 71.23 0.46 4.05 16 5 C 0.18 6.77 6.81 42.42 0.29 7.06 16 6 C -0.28 -12.31 8.63 22.58 0.19 -12.12 16 7 C 0.43 18.81 7.39 133.16 0.98 19.80 16 8 N -0.59 -26.86 2.96 -732.64 -2.17 -29.02 16 9 C 0.10 3.77 10.51 127.77 1.34 5.11 16 10 C 0.27 13.90 5.03 85.63 0.43 14.33 16 11 C -0.55 -30.74 9.39 25.60 0.24 -30.50 16 12 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 13 C 0.02 1.18 5.46 84.65 0.46 1.64 16 14 N -0.92 -52.88 13.29 21.45 0.28 -52.59 16 15 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 N -0.60 -23.10 9.23 -197.62 -1.82 -24.92 16 20 C 0.33 10.66 12.28 180.90 2.22 12.88 16 21 N -0.58 -19.67 10.37 -188.35 -1.95 -21.62 16 22 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.13 6.43 5.20 -2.91 -0.02 6.41 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 32 H 0.08 2.73 7.33 -2.39 -0.02 2.72 16 33 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 34 H 0.02 1.10 6.05 -2.38 -0.01 1.09 16 35 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.23 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -66.02 308.59 3.95 -62.07 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.06 Total: 14.36 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.85 Total: 20.98 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -5.66 Total: -128.17 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.33 Total: -15.19 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.02 3.95 -62.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.829 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds