Wall clock time and date at job start Mon Mar 30 2020 07:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47232 * 300.00122 * 3 2 1 5 5 C 1.53002 * 109.46817 * 60.00361 * 3 2 1 6 6 C 1.50696 * 109.47242 * 180.02562 * 3 2 1 7 7 C 1.38171 * 120.40402 * 165.00125 * 6 3 2 8 8 C 1.39673 * 118.32378 * 179.97438 * 7 6 3 9 9 N 1.38520 * 120.53714 * 179.97438 * 8 7 6 10 10 C 1.36928 * 120.00043 * 359.97438 * 9 8 7 11 11 H 1.07992 * 120.00487 * 359.97438 * 10 9 8 12 12 C 1.38852 * 119.99871 * 180.02562 * 10 9 8 13 13 N 1.31540 * 119.99899 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00273 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46838 * 59.99803 * 14 12 10 16 16 H 1.48491 * 109.47116 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47097 * 300.00306 * 14 12 10 18 18 N 1.33067 * 118.92065 * 359.97438 * 8 7 6 19 19 C 1.31695 * 120.69175 * 0.02562 * 18 8 7 20 20 N 1.31835 * 121.84650 * 359.73660 * 19 18 8 21 21 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 26 26 H 1.09002 * 109.47045 * 59.99942 * 4 3 2 27 27 H 1.09000 * 109.47140 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47624 * 300.00318 * 4 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 32 32 H 1.08005 * 120.83989 * 359.97438 * 7 6 3 33 33 H 0.97004 * 119.99584 * 179.97438 * 9 8 7 34 34 H 0.97002 * 119.99861 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.07771 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5301 2.1636 1.2493 6 6 3.5470 1.4425 -0.0006 7 6 4.2461 2.5937 -0.3092 8 6 5.6420 2.5449 -0.2961 9 7 6.3885 3.6718 -0.5987 10 6 5.7586 4.8458 -0.9145 11 1 4.6798 4.8932 -0.9280 12 6 6.5069 5.9753 -1.2183 13 7 7.8209 5.9175 -1.2023 14 14 5.6476 7.5772 -1.6483 15 1 4.7988 8.0054 -0.5075 16 1 6.6631 8.6233 -1.9305 17 1 4.7978 7.3762 -2.8494 18 7 6.2429 1.3982 0.0117 19 6 5.5361 0.3249 0.2994 20 7 4.2178 0.3398 0.3002 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 0.4400 2.1637 -1.2492 27 1 1.8930 3.1915 -1.2489 28 1 1.8933 1.6500 -2.1392 29 1 1.8935 1.6498 2.1393 30 1 1.8938 3.1912 1.2496 31 1 0.4401 2.1637 1.2493 32 1 3.7264 3.5082 -0.5543 33 1 7.3575 3.6291 -0.5869 34 1 8.3437 6.7066 -1.4142 35 1 6.0508 -0.5920 0.5460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537960360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:57 Heat of formation + Delta-G solvation = 27.148380 kcal Electronic energy + Delta-G solvation = -16630.708315 eV Core-core repulsion = 14049.005918 eV Total energy + Delta-G solvation = -2581.702397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94186 -37.24352 -35.57451 -32.46059 -31.52297 -30.11494 -28.56223 -27.01434 -25.29740 -24.69207 -22.34584 -21.84803 -18.69899 -18.12110 -16.73754 -16.03168 -14.89006 -14.52946 -14.18793 -14.15660 -13.82997 -13.71595 -13.41120 -13.20280 -12.82338 -11.92441 -11.84894 -11.73159 -11.58765 -11.52322 -10.98700 -10.78519 -10.76997 -10.52855 -10.52293 -10.33355 -10.29079 -9.34689 -9.25400 -8.69847 -8.00706 -7.37939 -6.73408 -3.98946 2.21529 2.49578 3.07640 3.09693 3.10462 3.89112 4.68444 4.73475 4.86996 5.05155 5.13024 5.34771 5.38046 5.56285 5.60773 5.72573 5.82808 5.94116 6.06137 6.13985 6.16782 6.19502 6.29350 6.32824 6.41622 6.52658 6.65404 6.69130 6.80257 6.88870 7.14311 7.45762 7.75428 8.17355 8.61555 9.11823 9.22598 9.63893 10.42378 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.007153 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.226338 B = 3913.769424 C = 4708.077894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.095 4.095 3 C -0.010 4.010 4 C -0.140 4.140 5 C -0.135 4.135 6 C 0.196 3.804 7 C -0.299 4.299 8 C 0.376 3.624 9 N -0.516 5.516 10 C -0.307 4.307 11 H 0.105 0.895 12 C 0.028 3.972 13 N -0.879 5.879 14 Si 0.936 3.064 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.270 1.270 18 N -0.612 5.612 19 C 0.328 3.672 20 N -0.609 5.609 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.127 0.873 33 H 0.405 0.595 34 H 0.279 0.721 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -4.932 1.271 11.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.133 4.133 3 C -0.011 4.011 4 C -0.197 4.197 5 C -0.193 4.193 6 C 0.058 3.942 7 C -0.331 4.331 8 C 0.127 3.873 9 N -0.123 5.123 10 C -0.438 4.438 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.515 5.515 14 Si 0.762 3.238 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.195 1.195 18 N -0.341 5.341 19 C 0.035 3.965 20 N -0.335 5.335 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.241 0.759 34 H 0.089 0.911 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.099 -5.236 1.358 11.457 hybrid contribution -0.072 1.615 -0.445 1.677 sum -10.171 -3.620 0.912 10.835 Atomic orbital electron populations 1.21964 0.96914 1.00967 1.01592 1.21312 0.93859 0.95126 1.02977 1.19367 0.89430 0.96362 0.95940 1.21942 1.00362 1.00689 0.96730 1.21874 1.00375 1.00348 0.96718 1.20766 0.94657 0.88593 0.90227 1.21508 0.93746 1.00640 1.17191 1.18402 0.88645 0.86826 0.93413 1.40773 1.08551 1.05513 1.57435 1.19710 0.93543 0.86140 1.44416 0.87745 1.25390 0.95529 1.00110 0.96735 1.69680 1.04719 1.31652 1.45470 0.85821 0.78760 0.79875 0.79356 1.19460 1.20472 1.19462 1.67763 1.41602 0.99875 1.24887 1.24054 0.86992 0.94804 0.90602 1.68020 1.09425 1.29366 1.26667 0.92741 0.92808 0.93307 0.91072 0.92176 0.92276 0.92092 0.92718 0.92701 0.92424 0.92203 0.85535 0.75908 0.91056 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.21 37.16 0.34 -1.41 16 2 C -0.10 -1.34 4.35 -26.73 -0.12 -1.46 16 3 C -0.01 -0.15 0.66 -155.66 -0.10 -0.26 16 4 C -0.14 -1.99 7.74 37.16 0.29 -1.70 16 5 C -0.14 -1.91 8.06 37.16 0.30 -1.62 16 6 C 0.20 3.85 5.56 -82.32 -0.46 3.39 16 7 C -0.30 -6.55 8.43 -39.07 -0.33 -6.88 16 8 C 0.38 9.08 7.68 -154.71 -1.19 7.90 16 9 N -0.52 -13.16 5.43 -10.99 -0.06 -13.22 16 10 C -0.31 -7.79 9.56 -15.05 -0.14 -7.94 16 11 H 0.10 2.51 5.73 -52.49 -0.30 2.21 16 12 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 13 N -0.88 -23.10 13.05 55.49 0.72 -22.38 16 14 Si 0.94 19.18 29.55 -169.99 -5.02 14.16 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 N -0.61 -14.15 10.47 -13.79 -0.14 -14.29 16 19 C 0.33 6.65 12.28 -92.20 -1.13 5.52 16 20 N -0.61 -12.21 9.19 -10.87 -0.10 -12.31 16 21 H 0.05 0.57 6.43 -51.93 -0.33 0.24 16 22 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 27 H 0.06 0.91 6.79 -51.93 -0.35 0.55 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 32 H 0.13 2.70 4.85 -52.48 -0.25 2.45 16 33 H 0.40 10.71 8.02 -40.82 -0.33 10.38 16 34 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -27.18 284.08 -7.61 -34.79 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -4.65 Total: 12.81 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.64 Total: -3.84 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.42 Total: -62.19 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.18 -7.61 -34.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.935 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds