Wall clock time and date at job start Mon Mar 30 2020 07:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47232 * 300.00122 * 3 2 1 5 5 C 1.53002 * 109.46817 * 60.00361 * 3 2 1 6 6 C 1.50696 * 109.47242 * 180.02562 * 3 2 1 7 7 C 1.38171 * 120.40402 * 165.00125 * 6 3 2 8 8 C 1.39673 * 118.32378 * 179.97438 * 7 6 3 9 9 N 1.38520 * 120.53714 * 179.97438 * 8 7 6 10 10 C 1.36928 * 120.00043 * 359.97438 * 9 8 7 11 11 H 1.07992 * 120.00487 * 359.97438 * 10 9 8 12 12 C 1.38852 * 119.99871 * 180.02562 * 10 9 8 13 13 N 1.31540 * 119.99899 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00273 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46838 * 59.99803 * 14 12 10 16 16 H 1.48491 * 109.47116 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47097 * 300.00306 * 14 12 10 18 18 N 1.33067 * 118.92065 * 359.97438 * 8 7 6 19 19 C 1.31695 * 120.69175 * 0.02562 * 18 8 7 20 20 N 1.31835 * 121.84650 * 359.73660 * 19 18 8 21 21 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 26 26 H 1.09002 * 109.47045 * 59.99942 * 4 3 2 27 27 H 1.09000 * 109.47140 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.47624 * 300.00318 * 4 3 2 29 29 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 30 30 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 32 32 H 1.08005 * 120.83989 * 359.97438 * 7 6 3 33 33 H 0.97004 * 119.99584 * 179.97438 * 9 8 7 34 34 H 0.97002 * 119.99861 * 180.02562 * 13 12 10 35 35 H 1.07999 * 119.07771 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 1.5301 2.1636 1.2493 6 6 3.5470 1.4425 -0.0006 7 6 4.2461 2.5937 -0.3092 8 6 5.6420 2.5449 -0.2961 9 7 6.3885 3.6718 -0.5987 10 6 5.7586 4.8458 -0.9145 11 1 4.6798 4.8932 -0.9280 12 6 6.5069 5.9753 -1.2183 13 7 7.8209 5.9175 -1.2023 14 14 5.6476 7.5772 -1.6483 15 1 4.7988 8.0054 -0.5075 16 1 6.6631 8.6233 -1.9305 17 1 4.7978 7.3762 -2.8494 18 7 6.2429 1.3982 0.0117 19 6 5.5361 0.3249 0.2994 20 7 4.2178 0.3398 0.3002 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 0.4400 2.1637 -1.2492 27 1 1.8930 3.1915 -1.2489 28 1 1.8933 1.6500 -2.1392 29 1 1.8935 1.6498 2.1393 30 1 1.8938 3.1912 1.2496 31 1 0.4401 2.1637 1.2493 32 1 3.7264 3.5082 -0.5543 33 1 7.3575 3.6291 -0.5869 34 1 8.3437 6.7066 -1.4142 35 1 6.0508 -0.5920 0.5460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:57 Heat of formation + Delta-G solvation = 12.933021 kcal Electronic energy + Delta-G solvation = -16631.324739 eV Core-core repulsion = 14049.005918 eV Total energy + Delta-G solvation = -2582.318821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.60633 -38.62107 -37.32976 -34.26622 -33.08311 -31.62236 -30.00454 -28.16585 -27.11315 -26.05786 -23.91306 -23.39251 -20.16140 -19.87925 -18.39053 -17.65379 -16.56286 -15.97416 -15.73280 -15.68494 -15.35098 -15.20064 -14.97052 -14.60689 -14.01398 -13.52132 -13.26327 -12.99773 -12.84286 -12.70299 -12.59468 -12.47641 -12.15437 -12.05597 -11.74412 -11.54836 -11.45061 -11.01324 -10.98231 -10.41305 -9.73610 -9.20982 -8.59026 -5.93118 0.52999 0.74728 1.40610 1.50366 1.52656 2.19442 2.88813 2.98238 3.41534 3.42121 3.72186 4.03787 4.13911 4.22146 4.44037 4.59054 4.66532 4.73754 4.79663 4.86199 4.89491 5.02319 5.09007 5.10750 5.19099 5.23804 5.25577 5.35876 5.39472 5.57615 5.67775 5.71601 6.02895 6.39070 6.74249 7.27382 7.37466 7.84217 8.58680 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.007153 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.226338 B = 3913.769424 C = 4708.077894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.013 4.013 4 C -0.137 4.137 5 C -0.131 4.131 6 C 0.202 3.798 7 C -0.314 4.314 8 C 0.363 3.637 9 N -0.539 5.539 10 C -0.327 4.327 11 H 0.111 0.889 12 C -0.019 4.019 13 N -0.920 5.920 14 Si 1.005 2.995 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.261 1.261 18 N -0.633 5.633 19 C 0.323 3.677 20 N -0.602 5.602 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.393 0.607 34 H 0.280 0.720 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -5.378 1.425 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.014 4.014 4 C -0.194 4.194 5 C -0.189 4.189 6 C 0.062 3.938 7 C -0.345 4.345 8 C 0.116 3.884 9 N -0.147 5.147 10 C -0.457 4.457 11 H 0.129 0.871 12 C -0.220 4.220 13 N -0.557 5.557 14 Si 0.826 3.174 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.186 1.186 18 N -0.363 5.363 19 C 0.032 3.968 20 N -0.327 5.327 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -12.848 -5.729 1.524 14.150 hybrid contribution 0.717 1.500 -0.428 1.717 sum -12.131 -4.229 1.097 12.894 Atomic orbital electron populations 1.21918 0.94115 1.02206 1.02585 1.21250 0.96243 0.93479 1.01773 1.19572 0.86391 0.98018 0.97425 1.21934 1.02350 0.99647 0.95482 1.21859 1.02381 0.99264 0.95391 1.21525 0.97030 0.87475 0.87786 1.21637 0.92936 1.01742 1.18223 1.18849 0.89688 0.86949 0.92901 1.40822 1.07957 1.06246 1.59722 1.20034 0.93999 0.86590 1.45116 0.87126 1.26345 0.96084 1.03190 0.96375 1.69794 1.06175 1.32555 1.47221 0.84800 0.77691 0.75475 0.79389 1.18587 1.20324 1.18595 1.67823 1.42512 1.00310 1.25682 1.24880 0.87399 0.95287 0.89237 1.68190 1.09350 1.29356 1.25781 0.91624 0.91832 0.92108 0.92205 0.93473 0.89068 0.93065 0.93645 0.93430 0.93441 0.88959 0.85381 0.77268 0.91031 0.77425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.21 71.98 0.66 -2.10 16 2 C -0.09 -2.29 4.35 30.60 0.13 -2.16 16 3 C -0.01 -0.38 0.66 -52.93 -0.03 -0.41 16 4 C -0.14 -3.57 7.74 71.98 0.56 -3.01 16 5 C -0.13 -3.37 8.06 71.98 0.58 -2.79 16 6 C 0.20 7.72 5.56 42.44 0.24 7.95 16 7 C -0.31 -13.80 8.43 22.60 0.19 -13.61 16 8 C 0.36 17.91 7.68 133.16 1.02 18.93 16 9 N -0.54 -28.55 5.43 -188.67 -1.02 -29.57 16 10 C -0.33 -17.03 9.56 84.04 0.80 -16.23 16 11 H 0.11 5.42 5.73 -2.91 -0.02 5.40 16 12 C -0.02 -0.95 5.50 84.88 0.47 -0.48 16 13 N -0.92 -49.84 13.05 21.65 0.28 -49.55 16 14 Si 1.00 39.43 29.55 68.60 2.03 41.46 16 15 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 16 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 18 N -0.63 -29.50 10.47 -197.55 -2.07 -31.57 16 19 C 0.32 12.78 12.28 180.90 2.22 15.00 16 20 N -0.60 -23.37 9.19 -188.32 -1.73 -25.10 16 21 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 22 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.66 7.88 -2.39 -0.02 1.64 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.79 6.43 -2.39 -0.02 1.78 16 27 H 0.05 1.44 6.79 -2.39 -0.02 1.42 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 31 H 0.09 1.77 6.43 -2.39 -0.02 1.76 16 32 H 0.13 5.51 4.85 -2.91 -0.01 5.50 16 33 H 0.39 21.89 8.02 -92.71 -0.74 21.14 16 34 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.21 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -59.53 284.08 4.69 -54.84 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.36 Total: 38.40 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.84 Total: 1.10 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -4.54 Total: -135.79 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -59.53 4.69 -54.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.775 kcal (2) G-P(sol) polarization free energy of solvation -59.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds