Wall clock time and date at job start Mon Mar 30 2020 07:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99891 * 2 1 4 4 C 1.50700 * 109.47377 * 270.00556 * 3 2 1 5 5 H 1.07993 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99690 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00260 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99662 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47024 * 90.00017 * 8 6 4 10 10 H 1.48500 * 109.46928 * 209.99902 * 8 6 4 11 11 H 1.48493 * 109.47026 * 329.99609 * 8 6 4 12 12 C 1.38536 * 120.00011 * 180.02562 * 2 1 3 13 13 C 1.39668 * 120.53428 * 4.99219 * 12 2 1 14 14 C 1.38069 * 118.33646 * 180.02562 * 13 12 2 15 15 C 1.50696 * 120.40229 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47272 * 125.01896 * 15 14 13 17 17 C 1.53001 * 117.49936 * 243.75004 * 16 15 14 18 18 C 1.53007 * 117.49995 * 175.08761 * 16 15 14 19 19 N 1.32578 * 119.20177 * 359.97438 * 14 13 12 20 20 C 1.31768 * 121.00989 * 0.02562 * 19 14 13 21 21 N 1.31777 * 121.83449 * 0.26042 * 20 19 14 22 22 H 1.09002 * 109.46851 * 269.99710 * 1 2 3 23 23 H 1.09000 * 109.47703 * 29.99451 * 1 2 3 24 24 H 1.09001 * 109.47529 * 149.99550 * 1 2 3 25 25 H 1.09001 * 109.47464 * 30.00758 * 3 2 1 26 26 H 1.09000 * 109.46931 * 150.00465 * 3 2 1 27 27 H 0.97003 * 119.99980 * 180.02562 * 7 6 4 28 28 H 1.08005 * 120.82950 * 359.97438 * 13 12 2 29 29 H 1.09000 * 109.47124 * 245.02130 * 15 14 13 30 30 H 1.09001 * 109.46974 * 5.01794 * 15 14 13 31 31 H 1.09002 * 115.55175 * 29.42158 * 16 15 14 32 32 H 1.08993 * 117.50131 * 359.97438 * 17 16 15 33 33 H 1.09000 * 117.49915 * 145.02029 * 17 16 15 34 34 H 1.08998 * 117.49541 * 214.98165 * 18 16 15 35 35 H 1.08997 * 117.49624 * 359.97438 * 18 16 15 36 36 H 1.08002 * 119.08007 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0972 1.0964 -2.2417 6 6 3.1267 2.8776 -1.6726 7 7 3.5541 3.6176 -0.6730 8 14 3.4373 3.4174 -3.4338 9 1 2.3075 4.2610 -3.8995 10 1 4.6980 4.1997 -3.4967 11 1 3.5535 2.2206 -4.3051 12 6 2.1577 -1.1998 -0.0005 13 6 1.4746 -2.4134 -0.1058 14 6 2.2101 -3.5819 -0.1011 15 6 1.5207 -4.9174 -0.2116 16 6 2.1098 -5.6998 -1.3870 17 6 1.1783 -6.0266 -2.5560 18 6 1.6210 -7.1344 -1.5967 19 7 3.5302 -3.5149 0.0017 20 6 4.1454 -2.3538 0.0994 21 7 3.4831 -1.2145 0.1047 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 1.6085 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 4.0309 4.4436 -0.8502 28 1 0.3979 -2.4373 -0.1879 29 1 1.6688 -5.4801 0.7101 30 1 0.4542 -4.7633 -0.3758 31 1 3.1528 -5.4845 -1.6196 32 1 0.1457 -5.6846 -2.4875 33 1 1.6085 -6.0266 -3.5575 34 1 2.3422 -7.8627 -1.9676 35 1 0.8800 -7.5209 -0.8970 36 1 5.2221 -2.3355 0.1821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:41 Heat of formation + Delta-G solvation = 57.537121 kcal Electronic energy + Delta-G solvation = -17379.490445 eV Core-core repulsion = 14670.879662 eV Total energy + Delta-G solvation = -2708.610783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76294 -38.57207 -37.82093 -34.88202 -34.45085 -32.33551 -30.15561 -28.86812 -27.34809 -24.94980 -24.41876 -23.15985 -22.29045 -21.08449 -18.74722 -18.29158 -18.08337 -16.59608 -16.56604 -16.20473 -16.08493 -15.44575 -15.24922 -15.02023 -14.59787 -13.99867 -13.95870 -13.56578 -13.31063 -13.11810 -12.79003 -12.56433 -12.44274 -12.26786 -12.18459 -12.00888 -11.46273 -11.36724 -11.13290 -10.82676 -10.62792 -10.47176 -9.88136 -8.74143 -8.15372 -6.35467 0.28253 0.59285 1.35556 1.37653 1.47873 2.18247 2.39971 2.93748 3.08167 3.12097 3.37911 3.50394 3.78095 4.00751 4.12005 4.19280 4.28776 4.36228 4.53219 4.59500 4.65729 4.81869 4.84861 4.89040 4.91117 5.01208 5.05616 5.10503 5.24285 5.33152 5.42823 5.59203 5.70066 5.96437 6.09143 6.41349 6.70749 6.77681 7.33409 7.56855 8.85175 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.005164 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.109160 B = 5420.387086 C = 5606.093472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.595 5.595 3 C 0.268 3.732 4 C -0.537 4.537 5 H 0.045 0.955 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.423 3.577 13 C -0.304 4.304 14 C 0.197 3.803 15 C -0.028 4.028 16 C -0.158 4.158 17 C -0.186 4.186 18 C -0.163 4.163 19 N -0.580 5.580 20 C 0.324 3.676 21 N -0.608 5.608 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.015 0.985 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.162 0.838 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 -17.474 -0.224 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.304 5.304 3 C 0.147 3.853 4 C -0.576 4.576 5 H 0.063 0.937 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.202 1.202 12 C 0.179 3.821 13 C -0.332 4.332 14 C 0.055 3.945 15 C -0.066 4.066 16 C -0.177 4.177 17 C -0.223 4.223 18 C -0.199 4.199 19 N -0.301 5.301 20 C 0.035 3.965 21 N -0.333 5.333 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.180 0.820 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.555 -17.056 -0.089 18.272 hybrid contribution -0.159 1.030 -0.830 1.333 sum -6.714 -16.025 -0.919 17.399 Atomic orbital electron populations 1.21852 0.77221 1.03742 1.02186 1.46981 1.06552 1.03467 1.73445 1.18798 0.91419 0.79283 0.95824 1.21628 1.36620 1.06418 0.92914 0.93666 1.25745 0.94985 0.96380 1.01491 1.70039 1.38964 1.14757 1.32784 0.85485 0.78081 0.78078 0.79546 1.19136 1.20440 1.20188 1.18988 0.88679 0.87274 0.87112 1.22147 1.03021 0.91419 1.16646 1.21676 0.89382 0.95788 0.87640 1.20165 0.98785 0.88687 0.98933 1.22098 0.99094 0.98779 0.97685 1.23164 1.00181 1.03987 0.94943 1.23063 1.03613 0.90675 1.02593 1.68217 1.10894 1.29191 1.21831 1.24995 1.01264 0.81753 0.88526 1.68060 1.08654 1.33098 1.23502 0.91583 0.91200 0.89372 0.96683 0.96549 0.92417 0.82032 0.88265 0.88022 0.89280 0.87717 0.89335 0.88360 0.87122 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 10.31 127.77 1.32 4.25 16 2 N -0.60 -25.94 2.96 -732.64 -2.17 -28.10 16 3 C 0.27 14.39 5.24 85.63 0.45 14.84 16 4 C -0.54 -30.81 9.39 25.60 0.24 -30.57 16 5 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 6 C 0.01 0.75 5.46 84.66 0.46 1.22 16 7 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 C 0.42 17.81 7.39 133.18 0.98 18.79 16 13 C -0.30 -9.98 8.95 22.58 0.20 -9.78 16 14 C 0.20 6.01 6.19 42.40 0.26 6.27 16 15 C -0.03 -0.59 5.92 29.85 0.18 -0.42 16 16 C -0.16 -3.33 5.67 -10.79 -0.06 -3.39 16 17 C -0.19 -3.30 10.18 30.62 0.31 -2.99 16 18 C -0.16 -2.51 10.26 30.62 0.31 -2.20 16 19 N -0.58 -19.82 9.86 -188.35 -1.86 -21.68 16 20 C 0.32 12.18 12.28 180.90 2.22 14.40 16 21 N -0.61 -27.48 9.23 -197.59 -1.82 -29.30 16 22 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 24 H 0.09 2.25 6.05 -2.39 -0.01 2.23 16 25 H 0.02 0.84 8.07 -2.39 -0.02 0.82 16 26 H 0.02 0.99 7.33 -2.39 -0.02 0.97 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.16 4.16 6.10 -2.91 -0.02 4.14 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.66 7.67 -2.39 -0.02 1.64 16 31 H 0.09 2.34 7.71 -2.39 -0.02 2.32 16 32 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.21 6.38 8.06 -2.91 -0.02 6.36 16 Total: -1.00 -69.34 307.35 4.40 -64.94 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.06 Total: 11.92 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.88 Total: 10.43 kcal Atomic # 7 Polarization: -128.66 SS G_CDS: -5.56 Total: -134.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.34 4.40 -64.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.477 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds