Wall clock time and date at job start Mon Mar 30 2020 07:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47203 * 2 1 4 4 C 1.53000 * 109.47538 * 119.99778 * 2 1 3 5 5 C 1.53000 * 109.47404 * 240.00052 * 2 1 3 6 6 C 1.50701 * 109.46893 * 65.58720 * 5 2 1 7 7 C 1.38177 * 120.39836 * 122.35715 * 6 5 2 8 8 C 1.39673 * 118.32064 * 179.97438 * 7 6 5 9 9 N 1.38518 * 120.53687 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00234 * 0.02562 * 9 8 7 11 11 H 1.07995 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.38851 * 120.00190 * 179.97438 * 10 9 8 13 13 N 1.31536 * 119.99901 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99996 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46860 * 60.00743 * 14 12 10 16 16 H 1.48497 * 109.46993 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47316 * 300.00189 * 14 12 10 18 18 N 1.33066 * 118.92494 * 0.02562 * 8 7 6 19 19 C 1.31710 * 120.68641 * 359.97438 * 18 8 7 20 20 N 1.31832 * 121.84318 * 359.73888 * 19 18 8 21 21 H 1.09001 * 109.47065 * 53.98653 * 1 2 3 22 22 H 1.09003 * 109.47364 * 173.98809 * 1 2 3 23 23 H 1.09008 * 109.47298 * 293.98703 * 1 2 3 24 24 H 1.08995 * 109.46963 * 60.00322 * 3 2 1 25 25 H 1.09001 * 109.47023 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46800 * 300.00080 * 3 2 1 27 27 H 1.09007 * 109.46885 * 60.00087 * 4 2 1 28 28 H 1.09001 * 109.47740 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47224 * 300.00659 * 4 2 1 30 30 H 1.08992 * 109.47457 * 185.58933 * 5 2 1 31 31 H 1.09004 * 109.46955 * 305.59163 * 5 2 1 32 32 H 1.08000 * 120.84048 * 359.97438 * 7 6 5 33 33 H 0.97002 * 119.99790 * 180.02562 * 9 8 7 34 34 H 0.96997 * 120.00218 * 179.97438 * 13 12 10 35 35 H 1.07997 * 119.07167 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0400 -0.7212 -1.2492 6 6 1.6538 0.0646 -2.4758 7 6 2.6222 0.5059 -3.3571 8 6 2.2157 1.2300 -4.4801 9 7 3.1479 1.6948 -5.3932 10 6 4.4802 1.4450 -5.1988 11 1 4.8042 0.8860 -4.3335 12 6 5.4146 1.9105 -6.1144 13 7 5.0201 2.5918 -7.1681 14 14 7.2321 1.5704 -5.8488 15 1 7.4616 0.1036 -5.8164 16 1 8.0152 2.1699 -6.9590 17 1 7.6644 2.1677 -4.5599 18 7 0.9185 1.4670 -4.6582 19 6 0.0297 1.0268 -3.7916 20 7 0.3808 0.3360 -2.7251 21 1 -0.3633 0.6042 -0.8313 22 1 -0.3634 -1.0220 -0.1076 23 1 -0.3634 0.4178 0.9390 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7216 1.2490 29 1 1.6766 -0.2074 2.1392 30 1 3.1253 -0.8087 -1.2006 31 1 1.5972 -1.7160 -1.3007 32 1 3.6671 0.2962 -3.1819 33 1 2.8570 2.1972 -6.1702 34 1 5.6728 2.9173 -7.8075 35 1 -1.0165 1.2338 -3.9620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537960602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:00 Heat of formation + Delta-G solvation = 27.018775 kcal Electronic energy + Delta-G solvation = -16561.121038 eV Core-core repulsion = 13979.413021 eV Total energy + Delta-G solvation = -2581.708017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87386 -37.27934 -35.60187 -32.58984 -31.79144 -29.60566 -27.02178 -26.89780 -26.71963 -25.22313 -22.70503 -21.20578 -18.58580 -18.14028 -16.80611 -15.73851 -14.87122 -14.70343 -14.23961 -14.21268 -13.81668 -13.63278 -13.44459 -13.20715 -12.34094 -12.19061 -11.75750 -11.62832 -11.55670 -11.34160 -11.24649 -10.85524 -10.76292 -10.53292 -10.47564 -10.37293 -10.29574 -9.39949 -9.21993 -8.68218 -7.94022 -7.38396 -6.74049 -3.99548 2.21462 2.48177 3.07553 3.09599 3.10274 3.88850 4.66798 4.76697 4.95117 5.04442 5.11684 5.26870 5.30509 5.55651 5.77395 5.81386 5.85174 6.01597 6.06314 6.12049 6.15470 6.26572 6.34486 6.40265 6.43893 6.55353 6.66082 6.67299 6.89359 6.97824 7.14031 7.47096 7.76419 8.16564 8.60890 9.11001 9.21697 9.63219 10.41708 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.006729 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.478272 B = 4160.199200 C = 4881.770355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.055 4.055 6 C 0.193 3.807 7 C -0.303 4.303 8 C 0.377 3.623 9 N -0.515 5.515 10 C -0.308 4.308 11 H 0.105 0.895 12 C 0.028 3.972 13 N -0.879 5.879 14 Si 0.937 3.063 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.270 1.270 18 N -0.612 5.612 19 C 0.327 3.673 20 N -0.605 5.605 21 H 0.091 0.909 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.405 0.595 34 H 0.279 0.721 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -4.098 10.615 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.093 4.093 6 C 0.055 3.945 7 C -0.335 4.335 8 C 0.128 3.872 9 N -0.122 5.122 10 C -0.439 4.439 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.515 5.515 14 Si 0.762 3.238 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.195 1.195 18 N -0.342 5.342 19 C 0.035 3.965 20 N -0.332 5.332 21 H 0.110 0.890 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.467 -3.806 10.189 11.416 hybrid contribution 1.707 -0.008 -0.309 1.735 sum -1.759 -3.814 9.880 10.736 Atomic orbital electron populations 1.22021 0.93744 1.02275 1.01785 1.20384 0.96728 0.95156 0.93503 1.21846 1.00530 0.95691 1.01412 1.21891 1.00657 1.00034 0.97170 1.20552 1.00324 0.97775 0.90638 1.20771 0.88872 0.91677 0.93174 1.21566 1.00741 1.11721 0.99477 1.18391 0.87129 0.92349 0.89336 1.40784 1.04129 1.46494 1.20790 1.19727 0.80592 1.33956 1.09578 0.87693 1.25395 1.01317 0.96044 0.95016 1.69676 1.36419 1.34051 1.11355 0.85812 0.80510 0.79069 0.78366 1.19462 1.20473 1.19469 1.67771 1.01197 1.30852 1.34376 1.24085 0.98155 0.88962 0.85346 1.68026 1.18615 1.23447 1.23094 0.89013 0.93501 0.94660 0.93407 0.93061 0.92441 0.92898 0.92957 0.92962 0.91057 0.90740 0.85731 0.75913 0.91041 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.92 37.15 0.29 -1.67 16 2 C -0.06 -0.79 0.80 -154.51 -0.12 -0.91 16 3 C -0.14 -2.02 8.14 37.16 0.30 -1.71 16 4 C -0.14 -1.59 8.47 37.16 0.31 -1.28 16 5 C -0.05 -0.84 4.75 -27.88 -0.13 -0.98 16 6 C 0.19 3.69 4.63 -82.32 -0.38 3.31 16 7 C -0.30 -6.58 9.02 -39.07 -0.35 -6.93 16 8 C 0.38 8.99 7.68 -154.72 -1.19 7.81 16 9 N -0.52 -13.07 5.43 -10.99 -0.06 -13.13 16 10 C -0.31 -7.79 9.56 -15.05 -0.14 -7.94 16 11 H 0.11 2.52 5.73 -52.49 -0.30 2.22 16 12 C 0.03 0.71 5.50 -17.45 -0.10 0.61 16 13 N -0.88 -23.06 13.05 55.49 0.72 -22.34 16 14 Si 0.94 19.18 29.55 -169.99 -5.02 14.15 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 N -0.61 -13.91 10.47 -13.79 -0.14 -14.06 16 19 C 0.33 6.44 12.28 -92.19 -1.13 5.30 16 20 N -0.60 -11.59 7.44 -10.87 -0.08 -11.67 16 21 H 0.09 1.47 5.71 -51.93 -0.30 1.17 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.00 7.06 -51.93 -0.37 0.63 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.12 2.65 6.01 -52.49 -0.32 2.33 16 33 H 0.40 10.66 8.02 -40.82 -0.33 10.33 16 34 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 287.98 15.07 4.34 4.34 Total: -1.00 -26.62 287.98 -7.84 -34.46 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.96 Total: 12.64 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.64 Total: -4.39 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.44 Total: -61.20 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.62 -7.84 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.475 kcal (2) G-P(sol) polarization free energy of solvation -26.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds