Wall clock time and date at job start Mon Mar 30 2020 07:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99861 * 2 1 4 4 C 1.50696 * 109.47332 * 270.00067 * 3 2 1 5 5 H 1.08001 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00063 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99779 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99903 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47383 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47114 * 119.99827 * 8 6 4 11 11 H 1.48498 * 109.46978 * 240.00063 * 8 6 4 12 12 C 1.38540 * 120.00297 * 180.02562 * 2 1 3 13 13 C 1.39662 * 120.53308 * 184.99814 * 12 2 1 14 14 C 1.38079 * 118.33063 * 179.97438 * 13 12 2 15 15 C 1.50701 * 120.39958 * 180.02562 * 14 13 12 16 16 C 1.53784 * 113.69099 * 298.33759 * 15 14 13 17 17 C 1.53785 * 87.07897 * 139.98946 * 16 15 14 18 18 C 1.53774 * 87.08209 * 334.56859 * 17 16 15 19 19 N 1.32577 * 119.20333 * 0.27676 * 14 13 12 20 20 C 1.31765 * 121.00796 * 359.43720 * 19 14 13 21 21 N 1.31781 * 121.83360 * 0.57819 * 20 19 14 22 22 H 1.09005 * 109.46850 * 269.99830 * 1 2 3 23 23 H 1.09005 * 109.47217 * 29.99496 * 1 2 3 24 24 H 1.08992 * 109.47396 * 149.99819 * 1 2 3 25 25 H 1.08995 * 109.47212 * 30.00641 * 3 2 1 26 26 H 1.08999 * 109.46773 * 150.00260 * 3 2 1 27 27 H 0.96991 * 119.99226 * 179.97438 * 7 6 4 28 28 H 1.07990 * 120.83732 * 359.97438 * 13 12 2 29 29 H 1.08997 * 112.84926 * 167.06896 * 15 14 13 30 30 H 1.08994 * 113.61284 * 254.53988 * 16 15 14 31 31 H 1.09000 * 113.61018 * 25.44267 * 16 15 14 32 32 H 1.08997 * 113.61411 * 220.01330 * 17 16 15 33 33 H 1.09000 * 113.68953 * 89.13023 * 17 16 15 34 34 H 1.09006 * 113.61590 * 270.88011 * 18 17 16 35 35 H 1.09002 * 113.69199 * 139.99438 * 18 17 16 36 36 H 1.08005 * 119.08276 * 180.26613 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.8587 2.4178 -4.3673 10 1 2.7985 4.7383 -3.6668 11 1 4.8990 3.5265 -3.6675 12 6 2.1577 -1.1998 -0.0005 13 6 3.5503 -1.2150 0.1043 14 6 4.1944 -2.4363 0.0996 15 6 5.6957 -2.5072 0.2108 16 6 6.4344 -1.8149 -0.9468 17 6 7.4308 -1.2961 0.1034 18 6 6.2965 -1.4328 1.1326 19 7 3.4767 -3.5458 -0.0088 20 6 2.1632 -3.4982 -0.1007 21 7 1.5073 -2.3551 -0.1003 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6085 2.0284 0.5139 26 1 3.1499 1.1384 0.5138 27 1 4.0300 4.4441 -0.8503 28 1 4.1093 -0.2948 0.1868 29 1 6.0576 -3.5138 0.4198 30 1 6.8753 -2.5101 -1.6611 31 1 5.8540 -1.0260 -1.4253 32 1 7.7460 -0.2663 -0.0649 33 1 8.2678 -1.9707 0.2838 34 1 5.6785 -0.5394 1.2226 35 1 6.6248 -1.8193 2.0975 36 1 1.6089 -4.4214 -0.1834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537960622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:40 Heat of formation + Delta-G solvation = 68.031201 kcal Electronic energy + Delta-G solvation = -17998.009719 eV Core-core repulsion = 15289.853993 eV Total energy + Delta-G solvation = -2708.155725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47850 -38.29021 -36.34220 -33.03603 -32.17113 -30.64493 -28.08939 -26.45166 -25.42855 -24.84668 -23.86350 -22.42531 -20.51202 -19.05803 -17.01900 -16.78584 -16.58318 -15.16359 -14.86662 -14.59258 -14.46039 -14.32102 -13.79764 -13.38464 -13.21941 -12.30217 -12.18828 -12.14386 -12.07262 -11.54095 -11.38838 -11.01844 -10.82473 -10.59518 -10.52252 -10.36869 -10.23823 -10.14904 -9.75080 -9.56144 -8.98129 -8.62210 -8.53197 -7.06345 -6.20347 -4.29848 1.71124 2.07546 3.18674 3.27356 3.32080 3.75342 4.29831 4.46396 4.56463 4.80725 4.94238 4.95513 5.10798 5.17859 5.21389 5.47520 5.77726 5.83107 5.96542 5.97452 6.03123 6.07907 6.10879 6.15453 6.22588 6.28247 6.38411 6.45759 6.70313 6.85646 7.05314 7.10495 7.47931 7.72731 7.99990 8.14347 8.19227 8.76090 8.96158 9.37715 10.83975 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.008923 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.568460 B = 3137.053251 C = 4287.366199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.578 5.578 3 C 0.248 3.752 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.444 3.556 13 C -0.272 4.272 14 C 0.198 3.802 15 C -0.061 4.061 16 C -0.127 4.127 17 C -0.141 4.141 18 C -0.132 4.132 19 N -0.581 5.581 20 C 0.325 3.675 21 N -0.597 5.597 22 H 0.039 0.961 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.148 0.852 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -8.637 2.426 9.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.287 5.287 3 C 0.129 3.871 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.200 3.800 13 C -0.300 4.300 14 C 0.058 3.942 15 C -0.081 4.081 16 C -0.166 4.166 17 C -0.178 4.178 18 C -0.170 4.170 19 N -0.303 5.303 20 C 0.035 3.965 21 N -0.324 5.324 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.165 0.835 29 H 0.121 0.879 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.253 -9.021 2.398 9.602 hybrid contribution 0.473 1.197 -0.951 1.600 sum 2.726 -7.824 1.448 8.410 Atomic orbital electron populations 1.21485 0.80153 1.02584 1.00188 1.47046 1.05684 1.03622 1.72329 1.19464 0.92192 0.77855 0.97624 1.21531 1.36932 1.06757 0.92233 0.92138 1.24933 0.95180 0.96099 0.97573 1.69929 1.37982 1.14308 1.30741 0.86453 0.78138 0.78588 0.84422 1.19709 1.20780 1.20695 1.18601 0.88584 0.86425 0.86395 1.22039 0.94358 1.00479 1.13125 1.20999 0.95487 0.87990 0.89753 1.21460 0.88335 0.99876 0.98391 1.22975 0.97493 1.00180 0.95907 1.22792 0.96607 1.01706 0.96735 1.23052 0.97674 0.99088 0.97178 1.68113 1.08297 1.31846 1.22010 1.24342 0.87512 0.94765 0.89904 1.67911 1.41569 0.98111 1.24770 0.94266 0.91395 0.91259 0.94275 0.94364 0.92516 0.83453 0.87868 0.91423 0.89132 0.90998 0.90362 0.89017 0.91413 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.51 59.84 0.63 2.46 16 2 N -0.58 -12.54 2.96 -182.92 -0.54 -13.08 16 3 C 0.25 6.01 5.03 -5.19 -0.03 5.99 16 4 C -0.54 -14.19 9.39 -34.44 -0.32 -14.51 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.44 9.45 7.39 -154.79 -1.14 8.30 16 13 C -0.27 -5.51 7.99 -39.11 -0.31 -5.82 16 14 C 0.20 3.61 6.21 -82.33 -0.51 3.10 16 15 C -0.06 -0.92 4.18 -90.96 -0.38 -1.30 16 16 C -0.13 -1.82 7.56 -25.91 -0.20 -2.01 16 17 C -0.14 -1.76 8.08 -25.92 -0.21 -1.97 16 18 C -0.13 -1.82 7.46 -25.92 -0.19 -2.01 16 19 N -0.58 -10.63 10.37 -10.88 -0.11 -10.75 16 20 C 0.33 5.71 12.28 -92.19 -1.13 4.58 16 21 N -0.60 -11.78 9.23 -13.81 -0.13 -11.90 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.07 1.23 7.33 -51.93 -0.38 0.85 16 25 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.04 0.96 6.05 -51.93 -0.31 0.65 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.15 3.11 4.76 -52.49 -0.25 2.86 16 29 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.49 7.80 -51.93 -0.40 1.09 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.42 6.28 -51.93 -0.33 1.10 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.18 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 299.64 15.07 4.52 4.52 Total: -1.00 -28.64 299.64 -9.47 -38.11 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.02 Total: 2.69 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.90 Total: -1.56 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.05 Total: -59.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.64 -9.47 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.140 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds