Wall clock time and date at job start Mon Mar 30 2020 07:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86803 * 119.99863 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47428 * 300.00338 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00209 * 3 2 1 7 7 C 1.38853 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99605 * 0.27497 * 7 2 1 10 10 C 1.38519 * 119.99930 * 179.71906 * 9 7 2 11 11 C 1.39713 * 120.53836 * 0.02562 * 10 9 7 12 12 C 1.38130 * 118.32257 * 179.97438 * 11 10 9 13 13 C 1.50700 * 120.40103 * 180.02562 * 12 11 10 14 14 C 1.54265 * 110.03281 * 32.90637 * 13 12 11 15 15 C 1.54965 * 104.15753 * 217.13762 * 14 13 12 16 16 C 1.54890 * 102.77740 * 37.88656 * 15 14 13 17 17 C 1.53877 * 110.03029 * 275.68673 * 13 12 11 18 18 N 1.32563 * 119.19663 * 359.97438 * 12 11 10 19 19 C 1.31792 * 121.02555 * 0.02562 * 18 12 11 20 20 N 1.31733 * 121.84962 * 359.70837 * 19 18 12 21 21 H 0.96991 * 119.99898 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00420 * 359.72573 * 9 7 2 23 23 H 1.07999 * 120.83615 * 359.97438 * 11 10 9 24 24 H 1.09004 * 110.01421 * 154.30015 * 13 12 11 25 25 H 1.08996 * 110.48726 * 335.78062 * 14 13 12 26 26 H 1.08999 * 110.48558 * 98.43253 * 14 13 12 27 27 H 1.09000 * 110.71976 * 279.57492 * 15 14 13 28 28 H 1.08997 * 110.76491 * 156.21842 * 15 14 13 29 29 H 1.09000 * 110.48877 * 203.40327 * 16 15 14 30 30 H 1.09002 * 110.59709 * 80.82042 * 16 15 14 31 31 H 1.09003 * 110.03307 * 238.57116 * 17 13 12 32 32 H 1.09000 * 110.03307 * 359.95260 * 17 13 12 33 33 H 1.08009 * 119.07611 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 0.0006 5 1 1.8905 2.3966 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0097 -1.2025 -0.0005 8 1 3.0897 -1.2024 -0.0010 9 7 1.3250 -2.3883 -0.0068 10 6 2.0176 -3.5879 -0.0132 11 6 3.4147 -3.6010 -0.0128 12 6 4.0586 -4.8230 -0.0188 13 6 5.5640 -4.8918 -0.0182 14 6 6.1469 -3.7046 0.7759 15 6 7.4218 -3.3109 -0.0123 16 6 6.9869 -3.5047 -1.4862 17 6 6.0981 -4.7652 -1.4557 18 7 3.3363 -5.9345 -0.0242 19 6 2.0191 -5.8887 -0.0243 20 7 1.3633 -4.7463 -0.0135 21 1 -0.4849 0.8400 0.0004 22 1 0.3550 -2.3884 -0.0068 23 1 3.9770 -2.6789 -0.0080 24 1 5.8943 -5.8331 0.4212 25 1 5.4399 -2.8753 0.7961 26 1 6.4040 -4.0129 1.7892 27 1 8.2495 -3.9749 0.2367 28 1 7.6883 -2.2713 0.1783 29 1 7.8569 -3.6667 -2.1225 30 1 6.4161 -2.6437 -1.8339 31 1 6.6882 -5.6445 -1.7137 32 1 5.2683 -4.6548 -2.1539 33 1 1.4617 -6.8138 -0.0292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:04 Heat of formation + Delta-G solvation = 14.596211 kcal Electronic energy + Delta-G solvation = -16104.802829 eV Core-core repulsion = 13549.867608 eV Total energy + Delta-G solvation = -2554.935221 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59098 -38.92291 -37.49661 -34.43838 -33.48217 -31.32489 -29.58035 -29.03930 -27.13978 -24.78528 -23.43525 -21.42757 -20.81519 -20.03045 -18.48741 -17.85055 -16.62969 -16.38725 -16.03326 -15.70837 -15.54323 -15.39988 -14.98722 -14.11290 -13.85930 -13.53903 -13.43058 -12.75589 -12.58558 -12.27528 -12.22600 -12.08350 -11.93416 -11.87460 -11.64851 -11.37499 -11.04076 -10.98672 -10.39758 -9.79186 -9.23032 -8.60331 -5.94226 0.50558 0.71467 1.40547 1.47220 1.55320 2.18355 2.87077 2.96939 3.37096 3.39565 3.67856 3.85608 3.91306 4.13088 4.41380 4.55003 4.58835 4.68161 4.70847 4.80492 4.89929 4.93795 5.00727 5.10584 5.19745 5.23425 5.28768 5.37368 5.48554 5.56192 5.65947 6.00417 6.37098 6.73029 7.25907 7.35692 7.82157 8.57841 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.008859 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.258538 B = 3159.966167 C = 4273.029420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 1.004 2.996 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.325 4.325 8 H 0.111 0.889 9 N -0.538 5.538 10 C 0.364 3.636 11 C -0.314 4.314 12 C 0.198 3.802 13 C -0.037 4.037 14 C -0.127 4.127 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.106 4.106 18 N -0.613 5.613 19 C 0.325 3.675 20 N -0.634 5.634 21 H 0.280 0.720 22 H 0.394 0.606 23 H 0.133 0.867 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.225 -4.118 -0.713 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.826 3.174 4 H -0.175 1.175 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.129 0.871 9 N -0.146 5.146 10 C 0.116 3.884 11 C -0.345 4.345 12 C 0.059 3.941 13 C -0.057 4.057 14 C -0.165 4.165 15 C -0.152 4.152 16 C -0.161 4.161 17 C -0.144 4.144 18 N -0.338 5.338 19 C 0.034 3.966 20 N -0.364 5.364 21 H 0.090 0.910 22 H 0.228 0.772 23 H 0.151 0.849 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.625 -4.463 -0.710 13.409 hybrid contribution -0.647 1.488 0.000 1.623 sum 11.978 -2.974 -0.709 12.362 Atomic orbital electron populations 1.69797 1.07690 1.29825 1.48401 1.26355 0.96550 1.03302 0.95871 0.84692 0.78816 0.75825 0.78063 1.17461 1.20045 1.20024 1.20103 0.93518 0.82406 1.49433 0.87101 1.40846 1.08288 1.01798 1.63686 1.18862 0.89836 0.86335 0.93351 1.21696 0.93183 1.00314 1.19318 1.21518 0.97069 0.87520 0.87956 1.20746 0.86492 1.00671 0.97752 1.22644 0.97837 0.96826 0.99158 1.22480 0.96668 1.02042 0.93965 1.22380 0.99244 0.96746 0.97686 1.22086 0.98594 0.99696 0.94000 1.68191 1.08069 1.31463 1.26054 1.24882 0.88053 0.95051 0.88620 1.67839 1.42317 0.98480 1.27730 0.91011 0.77225 0.84921 0.88825 0.92259 0.90657 0.89535 0.90747 0.89518 0.92875 0.89625 0.94228 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.65 0.28 -49.43 16 2 C -0.02 -0.99 5.50 84.88 0.47 -0.52 16 3 Si 1.00 39.35 29.55 68.60 2.03 41.38 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.32 -16.83 9.56 84.04 0.80 -16.02 16 8 H 0.11 5.44 5.73 -2.91 -0.02 5.42 16 9 N -0.54 -28.42 5.43 -188.65 -1.02 -29.45 16 10 C 0.36 17.94 7.68 133.18 1.02 18.97 16 11 C -0.31 -13.85 8.33 22.60 0.19 -13.66 16 12 C 0.20 7.72 5.62 42.42 0.24 7.96 16 13 C -0.04 -1.11 3.32 -10.82 -0.04 -1.14 16 14 C -0.13 -3.37 6.24 31.70 0.20 -3.17 16 15 C -0.11 -2.34 6.91 31.91 0.22 -2.12 16 16 C -0.12 -2.73 6.83 31.67 0.22 -2.51 16 17 C -0.11 -2.76 6.45 31.32 0.20 -2.56 16 18 N -0.61 -24.36 10.37 -188.32 -1.95 -26.31 16 19 C 0.32 12.99 12.28 180.90 2.22 15.21 16 20 N -0.63 -29.63 10.47 -197.53 -2.07 -31.70 16 21 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 22 H 0.39 21.85 8.02 -92.71 -0.74 21.10 16 23 H 0.13 5.74 4.22 -2.91 -0.01 5.72 16 24 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.06 1.86 5.41 -2.39 -0.01 1.85 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.22 7.67 -2.39 -0.02 1.21 16 33 H 0.21 6.49 8.06 -2.91 -0.02 6.47 16 Total: -1.00 -59.74 273.32 3.39 -56.35 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: 0.39 Total: 38.72 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.74 Total: 0.43 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -4.76 Total: -136.88 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -59.74 3.39 -56.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.948 kcal (2) G-P(sol) polarization free energy of solvation -59.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds