Wall clock time and date at job start Mon Mar 30 2020 07:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00243 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00353 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99975 * 3 2 1 7 7 C 1.38853 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99605 * 180.27495 * 7 2 1 10 10 C 1.38519 * 119.99930 * 179.71906 * 9 7 2 11 11 C 1.39718 * 120.53697 * 359.72924 * 10 9 7 12 12 C 1.38132 * 118.31862 * 179.77985 * 11 10 9 13 13 C 1.50700 * 120.39892 * 180.21363 * 12 11 10 14 14 C 1.53000 * 109.47111 * 125.27757 * 13 12 11 15 15 C 1.53002 * 117.50065 * 243.74540 * 14 13 12 16 16 C 1.53006 * 117.50018 * 175.08508 * 14 13 12 17 17 N 1.32563 * 119.19787 * 0.48745 * 12 11 10 18 18 C 1.31792 * 121.02565 * 359.74826 * 17 12 11 19 19 N 1.31732 * 121.84827 * 359.97438 * 18 17 12 20 20 H 0.97005 * 120.00078 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00420 * 359.72573 * 9 7 2 22 22 H 1.08003 * 120.83829 * 0.02562 * 11 10 9 23 23 H 1.08996 * 109.47161 * 245.27593 * 13 12 11 24 24 H 1.09000 * 109.47475 * 5.28041 * 13 12 11 25 25 H 1.09003 * 115.55197 * 29.41961 * 14 13 12 26 26 H 1.09005 * 117.49517 * 359.97438 * 15 14 13 27 27 H 1.09001 * 117.49946 * 145.02025 * 15 14 13 28 28 H 1.08995 * 117.49727 * 214.98299 * 16 14 13 29 29 H 1.09000 * 117.49785 * 359.97438 * 16 14 13 30 30 H 1.07996 * 119.07428 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4402 0.7000 7 6 2.0096 -1.2025 -0.0005 8 1 1.4695 -2.1378 -0.0005 9 7 3.3789 -1.2025 0.0052 10 6 4.0715 -2.4021 0.0105 11 6 3.3843 -3.6185 0.0158 12 6 4.1207 -4.7872 0.0164 13 6 3.4276 -6.1253 0.0172 14 6 3.9326 -6.9620 -1.1600 15 6 2.9205 -7.3411 -2.2430 16 6 3.4327 -8.4040 -1.2679 17 7 5.4445 -4.7173 0.0217 18 6 6.0633 -3.5537 0.0215 19 7 5.4018 -2.4146 0.0155 20 1 -0.4850 0.8401 0.0004 21 1 3.8639 -0.3625 0.0055 22 1 2.3046 -3.6445 0.0155 23 1 3.6423 -6.6451 0.9509 24 1 2.3518 -5.9774 -0.0773 25 1 4.9559 -6.7592 -1.4763 26 1 1.8947 -6.9947 -2.1166 27 1 3.2780 -7.3879 -3.2717 28 1 4.1269 -9.1497 -1.6553 29 1 2.7443 -8.7568 -0.4999 30 1 7.1431 -3.5336 0.0263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537960640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:24 Heat of formation + Delta-G solvation = 67.545861 kcal Electronic energy + Delta-G solvation = -13985.975344 eV Core-core repulsion = 11588.873811 eV Total energy + Delta-G solvation = -2397.101533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87127 -37.32098 -35.85950 -32.98251 -32.18379 -30.01746 -27.64876 -25.12808 -22.81112 -22.23722 -21.58749 -19.95598 -18.66914 -16.91810 -16.05778 -15.33780 -14.60725 -14.39553 -14.34409 -14.01827 -13.50844 -13.12452 -12.66044 -12.33097 -12.14642 -11.71154 -11.39788 -11.22891 -10.90351 -10.76625 -10.32327 -10.14819 -9.76566 -9.54650 -9.29611 -8.81327 -8.17541 -7.57189 -6.65554 -4.01885 2.08284 2.33948 2.98954 2.99669 3.03537 3.88440 3.98237 4.37892 4.61292 4.85834 4.93739 5.06862 5.15645 5.19563 5.39711 5.68648 5.73849 5.88705 6.00815 6.07047 6.12945 6.24299 6.34176 6.50833 6.58907 6.74410 7.27256 7.36412 7.74770 8.08616 8.39610 8.96916 9.03290 9.42913 10.44329 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.007140 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.731365 B = 3920.615616 C = 4529.646215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.049 3.951 3 Si 0.883 3.117 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.546 5.546 10 C 0.387 3.613 11 C -0.289 4.289 12 C 0.189 3.811 13 C -0.034 4.034 14 C -0.132 4.132 15 C -0.185 4.185 16 C -0.185 4.185 17 N -0.604 5.604 18 C 0.329 3.671 19 N -0.614 5.614 20 H 0.280 0.720 21 H 0.384 0.616 22 H 0.133 0.867 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -8.363 -1.308 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.158 4.158 3 Si 0.708 3.292 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.156 5.156 10 C 0.139 3.861 11 C -0.320 4.320 12 C 0.051 3.949 13 C -0.072 4.072 14 C -0.151 4.151 15 C -0.222 4.222 16 C -0.222 4.222 17 N -0.330 5.330 18 C 0.038 3.962 19 N -0.344 5.344 20 H 0.091 0.909 21 H 0.220 0.780 22 H 0.151 0.849 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.434 -8.094 -1.304 9.836 hybrid contribution -0.442 1.350 -0.018 1.421 sum 4.991 -6.744 -1.323 8.494 Atomic orbital electron populations 1.69652 1.05651 1.28492 1.46132 1.25018 0.95611 0.98573 0.96621 0.86567 0.80060 0.83055 0.79509 1.19113 1.19685 1.18902 1.19453 0.78591 0.96959 1.48995 0.86049 1.41012 1.06158 1.03753 1.64721 1.18233 0.87716 0.86773 0.93335 1.21711 1.01562 0.91880 1.16857 1.20819 0.89745 0.93908 0.90443 1.20022 0.98504 0.90984 0.97675 1.22217 0.99525 0.95502 0.97826 1.23065 0.99577 1.03930 0.95616 1.22963 1.04022 0.92308 1.02899 1.67992 1.09835 1.29367 1.25825 1.24071 0.99454 0.82565 0.90159 1.67752 1.07389 1.32253 1.26979 0.90929 0.78033 0.84903 0.90060 0.90498 0.86969 0.88758 0.89237 0.89186 0.89006 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.23 13.96 55.49 0.77 -22.46 16 2 C 0.05 1.25 5.50 -17.45 -0.10 1.15 16 3 Si 0.88 19.02 27.74 -169.99 -4.72 14.30 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.51 6.51 56.52 0.37 -5.14 16 7 C -0.31 -7.99 10.05 -15.05 -0.15 -8.15 16 8 H 0.12 3.27 5.96 -52.49 -0.31 2.96 16 9 N -0.55 -13.11 5.23 -10.98 -0.06 -13.17 16 10 C 0.39 9.00 7.68 -154.72 -1.19 7.82 16 11 C -0.29 -6.29 9.02 -39.07 -0.35 -6.64 16 12 C 0.19 3.66 6.19 -82.32 -0.51 3.15 16 13 C -0.03 -0.53 5.93 -27.88 -0.17 -0.69 16 14 C -0.13 -1.87 5.67 -90.62 -0.51 -2.38 16 15 C -0.18 -2.33 10.18 -26.69 -0.27 -2.60 16 16 C -0.18 -2.12 10.26 -26.69 -0.27 -2.40 16 17 N -0.60 -11.76 9.86 -10.88 -0.11 -11.87 16 18 C 0.33 6.36 12.28 -92.21 -1.13 5.22 16 19 N -0.61 -13.45 10.47 -13.79 -0.14 -13.59 16 20 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 21 H 0.38 8.85 5.88 -40.82 -0.24 8.61 16 22 H 0.13 2.91 6.02 -52.48 -0.32 2.59 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 25 H 0.11 1.73 7.71 -51.93 -0.40 1.33 16 26 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.17 2.66 8.06 -52.49 -0.42 2.23 16 LS Contribution 260.94 15.07 3.93 3.93 Total: -1.00 -27.53 260.94 -8.34 -35.87 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.37 Total: 12.49 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.65 Total: -5.51 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.47 Total: -61.08 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.72 Total: 14.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.53 -8.34 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.415 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds