Wall clock time and date at job start Mon Mar 30 2020 07:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00243 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00353 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99975 * 3 2 1 7 7 C 1.38853 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99898 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99605 * 180.27495 * 7 2 1 10 10 C 1.38519 * 119.99930 * 179.71906 * 9 7 2 11 11 C 1.39718 * 120.53697 * 359.72924 * 10 9 7 12 12 C 1.38132 * 118.31862 * 179.77985 * 11 10 9 13 13 C 1.50700 * 120.39892 * 180.21363 * 12 11 10 14 14 C 1.53000 * 109.47111 * 125.27757 * 13 12 11 15 15 C 1.53002 * 117.50065 * 243.74540 * 14 13 12 16 16 C 1.53006 * 117.50018 * 175.08508 * 14 13 12 17 17 N 1.32563 * 119.19787 * 0.48745 * 12 11 10 18 18 C 1.31792 * 121.02565 * 359.74826 * 17 12 11 19 19 N 1.31732 * 121.84827 * 359.97438 * 18 17 12 20 20 H 0.97005 * 120.00078 * 359.97438 * 1 2 3 21 21 H 0.97000 * 120.00420 * 359.72573 * 9 7 2 22 22 H 1.08003 * 120.83829 * 0.02562 * 11 10 9 23 23 H 1.08996 * 109.47161 * 245.27593 * 13 12 11 24 24 H 1.09000 * 109.47475 * 5.28041 * 13 12 11 25 25 H 1.09003 * 115.55197 * 29.41961 * 14 13 12 26 26 H 1.09005 * 117.49517 * 359.97438 * 15 14 13 27 27 H 1.09001 * 117.49946 * 145.02025 * 15 14 13 28 28 H 1.08995 * 117.49727 * 214.98299 * 16 14 13 29 29 H 1.09000 * 117.49785 * 359.97438 * 16 14 13 30 30 H 1.07996 * 119.07428 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4968 2.0465 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4402 0.7000 7 6 2.0096 -1.2025 -0.0005 8 1 1.4695 -2.1378 -0.0005 9 7 3.3789 -1.2025 0.0052 10 6 4.0715 -2.4021 0.0105 11 6 3.3843 -3.6185 0.0158 12 6 4.1207 -4.7872 0.0164 13 6 3.4276 -6.1253 0.0172 14 6 3.9326 -6.9620 -1.1600 15 6 2.9205 -7.3411 -2.2430 16 6 3.4327 -8.4040 -1.2679 17 7 5.4445 -4.7173 0.0217 18 6 6.0633 -3.5537 0.0215 19 7 5.4018 -2.4146 0.0155 20 1 -0.4850 0.8401 0.0004 21 1 3.8639 -0.3625 0.0055 22 1 2.3046 -3.6445 0.0155 23 1 3.6423 -6.6451 0.9509 24 1 2.3518 -5.9774 -0.0773 25 1 4.9559 -6.7592 -1.4763 26 1 1.8947 -6.9947 -2.1166 27 1 3.2780 -7.3879 -3.2717 28 1 4.1269 -9.1497 -1.6553 29 1 2.7443 -8.7568 -0.4999 30 1 7.1431 -3.5336 0.0263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:24 Heat of formation + Delta-G solvation = 52.814522 kcal Electronic energy + Delta-G solvation = -13986.614143 eV Core-core repulsion = 11588.873811 eV Total energy + Delta-G solvation = -2397.740332 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.54347 -38.48154 -37.58360 -34.67722 -33.92732 -31.72283 -29.08011 -26.98971 -24.46340 -23.28081 -23.05222 -21.21920 -20.51521 -18.60130 -17.71272 -16.72405 -16.20398 -16.06295 -15.79559 -15.57177 -14.90749 -14.84255 -14.16978 -14.01683 -13.56996 -13.37801 -12.62340 -12.59698 -12.35495 -12.25218 -12.09074 -11.32996 -11.23994 -11.05326 -10.82815 -10.45897 -9.84587 -9.37540 -8.56689 -5.99955 0.43738 0.62695 1.26839 1.30962 1.34532 2.10491 2.62255 2.80747 2.96769 3.32360 3.49321 3.64534 3.92679 4.08362 4.17816 4.32547 4.44766 4.66021 4.78701 4.84247 4.88950 4.92127 5.08588 5.15762 5.32485 5.42064 5.44552 5.61341 5.93535 6.33965 6.51389 7.13076 7.18909 7.70139 8.56780 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.036320 B = 0.007140 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.731365 B = 3920.615616 C = 4529.646215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.320 4.320 8 H 0.095 0.905 9 N -0.561 5.561 10 C 0.381 3.619 11 C -0.314 4.314 12 C 0.200 3.800 13 C -0.032 4.032 14 C -0.152 4.152 15 C -0.190 4.190 16 C -0.160 4.160 17 N -0.597 5.597 18 C 0.328 3.672 19 N -0.625 5.625 20 H 0.284 0.716 21 H 0.387 0.613 22 H 0.123 0.877 23 H 0.097 0.903 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -9.462 -1.364 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.200 4.200 3 Si 0.769 3.231 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.450 4.450 8 H 0.113 0.887 9 N -0.174 5.174 10 C 0.135 3.865 11 C -0.344 4.344 12 C 0.060 3.940 13 C -0.070 4.070 14 C -0.171 4.171 15 C -0.227 4.227 16 C -0.197 4.197 17 N -0.321 5.321 18 C 0.038 3.962 19 N -0.354 5.354 20 H 0.094 0.906 21 H 0.223 0.777 22 H 0.140 0.860 23 H 0.115 0.885 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.222 -9.231 -1.359 11.799 hybrid contribution -0.831 1.422 -0.010 1.647 sum 6.392 -7.810 -1.369 10.184 Atomic orbital electron populations 1.69754 1.07167 1.29541 1.48299 1.25732 0.96304 1.01794 0.96207 0.85582 0.79102 0.78648 0.79784 1.18508 1.19087 1.17823 1.19280 0.79522 0.96374 1.49819 0.88732 1.40833 1.05360 1.04139 1.67104 1.18616 0.88593 0.87033 0.92286 1.21827 1.01417 0.92581 1.18619 1.21414 0.89788 0.94911 0.87873 1.20109 0.98432 0.89198 0.99232 1.22074 0.99144 0.97759 0.98082 1.23151 0.99101 1.04523 0.95922 1.23065 1.03470 0.91018 1.02109 1.68163 1.09693 1.29416 1.24847 1.25013 1.01273 0.81760 0.88169 1.67848 1.06635 1.33533 1.27430 0.90641 0.77678 0.85957 0.88500 0.90037 0.88304 0.88890 0.88600 0.87532 0.87694 0.76546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.51 13.96 21.65 0.30 -50.21 16 2 C 0.00 0.11 5.50 84.88 0.47 0.58 16 3 Si 0.95 39.43 27.74 68.60 1.90 41.33 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -10.01 6.51 99.48 0.65 -9.37 16 7 C -0.32 -17.08 10.05 84.04 0.84 -16.24 16 8 H 0.09 5.41 5.96 -2.91 -0.02 5.39 16 9 N -0.56 -27.25 5.23 -188.65 -0.99 -28.24 16 10 C 0.38 17.74 7.68 133.18 1.02 18.76 16 11 C -0.31 -13.78 9.02 22.60 0.20 -13.57 16 12 C 0.20 7.51 6.19 42.42 0.26 7.77 16 13 C -0.03 -0.94 5.93 29.85 0.18 -0.76 16 14 C -0.15 -3.97 5.67 -10.79 -0.06 -4.03 16 15 C -0.19 -4.39 10.18 30.62 0.31 -4.08 16 16 C -0.16 -3.16 10.26 30.62 0.31 -2.85 16 17 N -0.60 -21.90 9.86 -188.33 -1.86 -23.76 16 18 C 0.33 11.83 12.28 180.90 2.22 14.06 16 19 N -0.63 -26.48 10.47 -197.54 -2.07 -28.55 16 20 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 21 H 0.39 17.76 5.88 -92.71 -0.54 17.22 16 22 H 0.12 5.59 6.02 -2.91 -0.02 5.58 16 23 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.08 2.31 7.67 -2.39 -0.02 2.29 16 25 H 0.10 2.86 7.71 -2.39 -0.02 2.85 16 26 H 0.09 2.17 8.03 -2.38 -0.02 2.15 16 27 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.22 5.75 8.06 -2.91 -0.02 5.73 16 Total: -1.00 -59.47 260.94 3.61 -55.86 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.55 Total: 33.92 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.76 Total: -0.36 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -4.61 Total: -130.75 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.33 kcal Total: -59.47 3.61 -55.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.678 kcal (2) G-P(sol) polarization free energy of solvation -59.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds