Wall clock time and date at job start Mon Mar 30 2020 07:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34709 * 117.00149 * 2 1 4 4 O 1.21487 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.47647 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.34514 * 119.84589 * 179.97438 * 5 3 2 7 7 C 1.50005 * 122.93117 * 180.65891 * 6 5 3 8 8 C 1.52998 * 109.13823 * 217.31245 * 7 6 5 9 9 C 1.53003 * 109.13120 * 98.19753 * 7 6 5 10 10 C 1.52765 * 111.19216 * 337.76168 * 7 6 5 11 11 C 1.53506 * 109.14575 * 53.25727 * 10 7 6 12 12 H 1.09003 * 109.87687 * 57.01915 * 11 10 7 13 13 C 1.50700 * 109.87908 * 178.01930 * 11 10 7 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 11 10 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.47440 * 119.85052 * 0.02562 * 5 3 2 22 22 O 1.21281 * 121.16898 * 348.44425 * 21 5 3 23 23 H 1.09000 * 109.46992 * 300.00294 * 1 2 3 24 24 H 1.09001 * 109.46759 * 60.00507 * 1 2 3 25 25 H 1.09000 * 109.46672 * 179.97438 * 1 2 3 26 26 H 1.07998 * 118.53622 * 0.69105 * 6 5 3 27 27 H 1.08997 * 109.47350 * 181.68871 * 8 7 6 28 28 H 1.08996 * 109.47685 * 301.69832 * 8 7 6 29 29 H 1.09012 * 109.46985 * 61.69675 * 8 7 6 30 30 H 1.08996 * 109.47260 * 298.30887 * 9 7 6 31 31 H 1.08999 * 109.47409 * 58.31286 * 9 7 6 32 32 H 1.09005 * 109.47308 * 178.30687 * 9 7 6 33 33 H 1.09001 * 109.52152 * 293.35971 * 10 7 6 34 34 H 1.08993 * 109.52475 * 173.16474 * 10 7 6 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5381 1.2775 0.0006 6 6 4.1455 2.4777 0.0000 7 6 5.6371 2.6367 -0.0139 8 6 6.0226 3.8290 0.8639 9 6 6.0997 2.9013 -1.4481 10 6 6.3312 1.3818 0.5127 11 6 5.8236 0.1609 -0.2672 12 1 5.9980 0.3037 -1.3337 13 6 6.5339 -1.0810 0.2062 14 1 7.2763 -1.0138 0.9877 15 6 6.2359 -2.3031 -0.3582 16 7 5.3322 -2.3849 -1.3102 17 14 7.1157 -3.8427 0.2291 18 1 6.6183 -5.0175 -0.5309 19 1 8.5766 -3.6924 0.0088 20 1 6.8513 -4.0422 1.6767 21 6 4.3378 0.0389 0.0006 22 8 3.8241 -1.0400 0.2080 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5321 3.3664 0.0107 27 1 7.1033 3.9680 0.8338 28 1 5.5301 4.7278 0.4929 29 1 5.7091 3.6406 1.8909 30 1 5.8415 2.0489 -2.0763 31 1 5.6076 3.7960 -1.8294 32 1 7.1798 3.0477 -1.4603 33 1 6.1048 1.2576 1.5716 34 1 7.4085 1.4779 0.3783 35 1 4.8750 -1.5855 -1.6149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772574506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:07 Heat of formation + Delta-G solvation = -115.044238 kcal Electronic energy + Delta-G solvation = -19404.772989 eV Core-core repulsion = 16368.211053 eV Total energy + Delta-G solvation = -3036.561937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27938 -38.98234 -36.91686 -36.04289 -33.14382 -31.75774 -30.02238 -27.60772 -27.13433 -24.72055 -24.12257 -23.09425 -20.68697 -20.03248 -17.39790 -16.96188 -16.54940 -16.10324 -15.98370 -14.91998 -14.53897 -14.14173 -13.69322 -13.49079 -13.31744 -13.14502 -12.88044 -12.53189 -12.14836 -11.86455 -11.79120 -11.55710 -11.43609 -11.14189 -10.81950 -10.69729 -10.47596 -10.42701 -10.33219 -10.04247 -9.72672 -9.13481 -8.71151 -8.28140 -8.16395 -6.27015 -4.01711 1.09697 2.79881 3.06368 3.48219 3.53274 3.70122 3.92595 4.59881 4.74059 4.88187 4.98577 5.15106 5.27786 5.32441 5.36885 5.40540 5.58656 5.69075 5.72441 5.80428 5.92846 6.07388 6.12440 6.17060 6.27195 6.33473 6.43350 6.54503 6.60499 6.64831 6.98998 7.24180 8.03556 8.10390 8.45384 8.79770 8.97876 9.72898 11.11416 Molecular weight = 252.12amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.009902 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.687736 B = 2826.980022 C = 4164.168993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.324 6.324 3 C 0.513 3.487 4 O -0.529 6.529 5 C -0.230 4.230 6 C 0.012 3.988 7 C -0.054 4.054 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.089 4.089 11 C 0.003 3.997 12 H 0.055 0.945 13 C -0.608 4.608 14 H 0.054 0.946 15 C 0.035 3.965 16 N -0.880 5.880 17 Si 1.069 2.931 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.368 3.632 22 O -0.398 6.398 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 10.366 1.616 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.238 6.238 3 C 0.360 3.640 4 O -0.422 6.422 5 C -0.232 4.232 6 C -0.007 4.007 7 C -0.054 4.054 8 C -0.195 4.195 9 C -0.194 4.194 10 C -0.127 4.127 11 C -0.015 4.015 12 H 0.072 0.928 13 C -0.645 4.645 14 H 0.072 0.928 15 C -0.173 4.173 16 N -0.513 5.513 17 Si 0.898 3.102 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.239 3.761 22 O -0.267 6.267 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.399 8.385 1.485 8.847 hybrid contribution -0.627 1.947 0.307 2.069 sum -3.026 10.332 1.792 10.914 Atomic orbital electron populations 1.23243 0.77303 1.03569 1.01821 1.86865 1.22239 1.31562 1.83151 1.21422 0.89396 0.81398 0.71766 1.90761 1.67119 1.36286 1.48017 1.22251 0.89906 0.99263 1.11767 1.24092 0.96678 0.96280 0.83625 1.19828 0.90276 0.97949 0.97387 1.21894 1.01910 0.96370 0.99369 1.21870 1.01507 1.01841 0.94167 1.21661 0.99859 0.91444 0.99732 1.19558 0.89101 0.95425 0.97454 0.92774 1.21560 1.25486 0.92178 1.25314 0.92805 1.25696 0.95924 1.01385 0.94321 1.70696 1.21780 1.33160 1.25714 0.83548 0.75079 0.75680 0.75912 1.20839 1.21585 1.21511 1.24050 0.92451 0.85702 0.73848 1.90528 1.74528 1.29452 1.32200 0.92308 0.92289 0.88132 0.85630 0.91648 0.92552 0.92404 0.91516 0.92782 0.91436 0.92249 0.90966 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 101.05 1.07 1.59 16 2 O -0.32 -6.70 8.95 -47.32 -0.42 -7.12 16 3 C 0.51 10.55 7.89 34.57 0.27 10.83 16 4 O -0.53 -10.71 15.98 -19.26 -0.31 -11.02 16 5 C -0.23 -4.68 5.92 -103.63 -0.61 -5.30 16 6 C 0.01 0.20 8.07 -35.96 -0.29 -0.09 16 7 C -0.05 -0.81 0.75 -156.12 -0.12 -0.93 16 8 C -0.14 -1.60 8.38 37.16 0.31 -1.29 16 9 C -0.14 -1.85 8.18 37.16 0.30 -1.55 16 10 C -0.09 -1.65 3.91 -26.59 -0.10 -1.76 16 11 C 0.00 0.08 1.87 -92.28 -0.17 -0.09 16 12 H 0.05 1.32 6.32 -51.93 -0.33 0.99 16 13 C -0.61 -16.69 8.38 -34.44 -0.29 -16.98 16 14 H 0.05 1.45 7.75 -52.49 -0.41 1.04 16 15 C 0.04 1.02 4.79 -17.82 -0.09 0.93 16 16 N -0.88 -26.96 12.52 55.43 0.69 -26.26 16 17 Si 1.07 25.63 29.90 -169.99 -5.08 20.55 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.37 9.00 5.81 -30.19 -0.18 8.82 16 22 O -0.40 -11.28 12.91 -14.55 -0.19 -11.47 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.13 1.85 7.42 -52.49 -0.39 1.46 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.07 1.03 6.52 -51.93 -0.34 0.69 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.27 8.22 5.77 -40.82 -0.24 7.99 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -33.51 291.27 -5.53 -39.04 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.72 Total: -2.29 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.69 Total: -26.26 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.92 Total: -29.61 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.51 -5.53 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772574506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.008 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds