Wall clock time and date at job start Mon Mar 30 2020 07:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34709 * 117.00149 * 2 1 4 4 O 1.21487 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.47647 * 120.00084 * 179.97438 * 3 2 1 6 6 C 1.34514 * 119.84589 * 179.97438 * 5 3 2 7 7 C 1.50005 * 122.93117 * 180.65891 * 6 5 3 8 8 C 1.52998 * 109.13823 * 217.31245 * 7 6 5 9 9 C 1.53003 * 109.13120 * 98.19753 * 7 6 5 10 10 C 1.52765 * 111.19216 * 337.76168 * 7 6 5 11 11 C 1.53506 * 109.14575 * 53.25727 * 10 7 6 12 12 H 1.09003 * 109.87687 * 57.01915 * 11 10 7 13 13 C 1.50700 * 109.87908 * 178.01930 * 11 10 7 14 14 H 1.08002 * 119.99770 * 0.02562 * 13 11 10 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00147 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00278 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46793 * 300.00001 * 17 15 13 20 20 H 1.48500 * 109.47000 * 60.00094 * 17 15 13 21 21 C 1.47440 * 119.85052 * 0.02562 * 5 3 2 22 22 O 1.21281 * 121.16898 * 348.44425 * 21 5 3 23 23 H 1.09000 * 109.46992 * 300.00294 * 1 2 3 24 24 H 1.09001 * 109.46759 * 60.00507 * 1 2 3 25 25 H 1.09000 * 109.46672 * 179.97438 * 1 2 3 26 26 H 1.07998 * 118.53622 * 0.69105 * 6 5 3 27 27 H 1.08997 * 109.47350 * 181.68871 * 8 7 6 28 28 H 1.08996 * 109.47685 * 301.69832 * 8 7 6 29 29 H 1.09012 * 109.46985 * 61.69675 * 8 7 6 30 30 H 1.08996 * 109.47260 * 298.30887 * 9 7 6 31 31 H 1.08999 * 109.47409 * 58.31286 * 9 7 6 32 32 H 1.09005 * 109.47308 * 178.30687 * 9 7 6 33 33 H 1.09001 * 109.52152 * 293.35971 * 10 7 6 34 34 H 1.08993 * 109.52475 * 173.16474 * 10 7 6 35 35 H 0.97005 * 119.99661 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5381 1.2775 0.0006 6 6 4.1455 2.4777 0.0000 7 6 5.6371 2.6367 -0.0139 8 6 6.0226 3.8290 0.8639 9 6 6.0997 2.9013 -1.4481 10 6 6.3312 1.3818 0.5127 11 6 5.8236 0.1609 -0.2672 12 1 5.9980 0.3037 -1.3337 13 6 6.5339 -1.0810 0.2062 14 1 7.2763 -1.0138 0.9877 15 6 6.2359 -2.3031 -0.3582 16 7 5.3322 -2.3849 -1.3102 17 14 7.1157 -3.8427 0.2291 18 1 6.6183 -5.0175 -0.5309 19 1 8.5766 -3.6924 0.0088 20 1 6.8513 -4.0422 1.6767 21 6 4.3378 0.0389 0.0006 22 8 3.8241 -1.0400 0.2080 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5321 3.3664 0.0107 27 1 7.1033 3.9680 0.8338 28 1 5.5301 4.7278 0.4929 29 1 5.7091 3.6406 1.8909 30 1 5.8415 2.0489 -2.0763 31 1 5.6076 3.7960 -1.8294 32 1 7.1798 3.0477 -1.4603 33 1 6.1048 1.2576 1.5716 34 1 7.4085 1.4779 0.3783 35 1 4.8750 -1.5855 -1.6149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772574506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:06 Heat of formation + Delta-G solvation = -135.280486 kcal Electronic energy + Delta-G solvation = -19405.650499 eV Core-core repulsion = 16368.211053 eV Total energy + Delta-G solvation = -3037.439446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82037 -40.56528 -38.57257 -37.53343 -35.16334 -33.21518 -31.81740 -28.86763 -28.15017 -26.52326 -25.67867 -24.74459 -22.46522 -21.45314 -18.95095 -18.68384 -18.29209 -17.72439 -17.45165 -16.51559 -16.16595 -15.70616 -15.51995 -14.94813 -14.75206 -14.51065 -14.30513 -14.10461 -13.70415 -13.22230 -13.10296 -12.94962 -12.83019 -12.55915 -12.41781 -12.19776 -11.96575 -11.88100 -11.87162 -11.79779 -11.40040 -10.69717 -10.60216 -10.42815 -10.01936 -8.51158 -6.24524 -0.37922 1.13311 1.53111 1.62895 1.69810 1.79859 2.21588 2.62951 3.13244 3.43707 3.50883 3.71923 3.92436 3.97799 4.15735 4.17151 4.22438 4.54184 4.56964 4.61311 4.67988 4.78051 4.87988 4.90081 5.00136 5.09651 5.16944 5.17595 5.25955 5.37025 5.41495 5.52618 6.02941 6.27724 6.56686 6.64161 7.06911 7.58204 8.87972 Molecular weight = 252.12amu Principal moments of inertia in cm(-1) A = 0.017031 B = 0.009902 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.687736 B = 2826.980022 C = 4164.168993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.533 6.533 5 C -0.274 4.274 6 C 0.061 3.939 7 C -0.055 4.055 8 C -0.133 4.133 9 C -0.135 4.135 10 C -0.082 4.082 11 C -0.008 4.008 12 H 0.044 0.956 13 C -0.618 4.618 14 H 0.053 0.947 15 C -0.018 4.018 16 N -0.913 5.913 17 Si 1.109 2.891 18 H -0.290 1.290 19 H -0.261 1.261 20 H -0.281 1.281 21 C 0.367 3.633 22 O -0.453 6.453 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.157 0.843 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 12.974 2.192 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.427 6.427 5 C -0.276 4.276 6 C 0.042 3.958 7 C -0.055 4.055 8 C -0.190 4.190 9 C -0.192 4.192 10 C -0.119 4.119 11 C -0.027 4.027 12 H 0.061 0.939 13 C -0.655 4.655 14 H 0.071 0.929 15 C -0.220 4.220 16 N -0.548 5.548 17 Si 0.932 3.068 18 H -0.216 1.216 19 H -0.186 1.186 20 H -0.207 1.207 21 C 0.243 3.757 22 O -0.326 6.326 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.139 0.861 26 H 0.175 0.825 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.527 11.036 2.065 11.331 hybrid contribution -0.867 1.230 0.131 1.510 sum -2.394 12.266 2.196 12.689 Atomic orbital electron populations 1.23586 0.74676 1.05401 1.02960 1.86841 1.25131 1.32048 1.83098 1.21358 0.89438 0.81433 0.71684 1.90732 1.67108 1.36010 1.48801 1.21879 0.90042 0.98618 1.17065 1.24634 0.97990 0.95728 0.77439 1.19966 0.88591 0.97720 0.99178 1.21888 1.03460 0.95187 0.98423 1.21885 1.03096 1.01947 0.92292 1.21584 1.00840 0.91012 0.98504 1.19602 0.89195 0.96528 0.97395 0.93883 1.22015 1.25216 0.93726 1.24587 0.92868 1.27035 0.96014 1.04886 0.94058 1.70802 1.23642 1.32534 1.27815 0.83052 0.75716 0.72362 0.75666 1.21564 1.18581 1.20680 1.24218 0.93042 0.86476 0.72009 1.90491 1.75361 1.31619 1.35178 0.91062 0.91194 0.86126 0.82523 0.89901 0.89767 0.92401 0.94391 0.89749 0.89574 0.92985 0.89770 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.36 -15.11 8.95 -49.69 -0.44 -15.55 16 3 C 0.51 21.11 7.89 70.31 0.55 21.67 16 4 O -0.53 -20.88 15.98 19.88 0.32 -20.56 16 5 C -0.27 -11.14 5.92 -19.22 -0.11 -11.25 16 6 C 0.06 1.85 8.07 24.62 0.20 2.05 16 7 C -0.05 -1.44 0.75 -53.22 -0.04 -1.48 16 8 C -0.13 -2.39 8.38 71.98 0.60 -1.79 16 9 C -0.14 -3.20 8.18 71.98 0.59 -2.61 16 10 C -0.08 -2.92 3.91 30.69 0.12 -2.80 16 11 C -0.01 -0.41 1.87 -11.87 -0.02 -0.43 16 12 H 0.04 2.19 6.32 -2.39 -0.02 2.17 16 13 C -0.62 -34.64 8.38 25.60 0.21 -34.42 16 14 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 15 C -0.02 -1.06 4.79 84.65 0.41 -0.66 16 16 N -0.91 -58.24 12.52 21.45 0.27 -57.97 16 17 Si 1.11 52.39 29.90 68.60 2.05 54.44 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 C 0.37 18.54 5.81 28.36 0.16 18.71 16 22 O -0.45 -27.03 12.91 16.19 0.21 -26.82 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.16 3.91 7.42 -2.91 -0.02 3.89 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 1.12 6.52 -2.39 -0.02 1.11 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.75 8.14 -2.38 -0.02 1.74 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 35 H 0.25 16.49 5.77 -92.70 -0.53 15.96 16 Total: -1.00 -76.64 291.27 7.59 -69.05 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.32 Total: 8.44 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.87 Total: -11.03 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.27 Total: -57.97 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: 0.08 Total: -62.93 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Total: -76.64 7.59 -69.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772574506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.227 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds