Wall clock time and date at job start Mon Mar 30 2020 07:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34719 * 117.00424 * 2 1 4 4 O 1.21477 * 119.99478 * 0.02562 * 3 2 1 5 5 C 1.47642 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.34505 * 119.84693 * 180.02562 * 5 3 2 7 7 C 1.50008 * 122.93575 * 179.31805 * 6 5 3 8 8 C 1.53001 * 109.13495 * 142.68552 * 7 6 5 9 9 C 1.52997 * 109.13577 * 261.80852 * 7 6 5 10 10 C 1.52771 * 111.18529 * 22.25146 * 7 6 5 11 11 C 1.53506 * 109.14170 * 306.73364 * 10 7 6 12 12 H 1.08999 * 109.88468 * 303.05898 * 11 10 7 13 13 C 1.50708 * 109.87925 * 181.98624 * 11 10 7 14 14 H 1.07998 * 119.99524 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99808 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99432 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 120.00011 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47229 * 90.00024 * 17 15 13 19 19 H 1.48510 * 109.46956 * 209.99868 * 17 15 13 20 20 H 1.48496 * 109.47501 * 329.99425 * 17 15 13 21 21 C 1.47446 * 119.84864 * 359.73212 * 5 3 2 22 22 O 1.21277 * 121.17398 * 11.59259 * 21 5 3 23 23 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46782 * 59.99883 * 1 2 3 25 25 H 1.09004 * 109.47085 * 300.00002 * 1 2 3 26 26 H 1.08001 * 118.53404 * 359.29180 * 6 5 3 27 27 H 1.08998 * 109.47059 * 60.00380 * 8 7 6 28 28 H 1.09010 * 109.46869 * 180.02562 * 8 7 6 29 29 H 1.08993 * 109.47438 * 299.99854 * 8 7 6 30 30 H 1.08998 * 109.47088 * 60.00083 * 9 7 6 31 31 H 1.09004 * 109.46877 * 179.97438 * 9 7 6 32 32 H 1.08999 * 109.47197 * 299.99982 * 9 7 6 33 33 H 1.08991 * 109.52717 * 66.63443 * 10 7 6 34 34 H 1.08995 * 109.52246 * 186.77095 * 10 7 6 35 35 H 0.97003 * 119.99473 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5381 1.2775 0.0006 6 6 4.1456 2.4776 0.0011 7 6 5.6371 2.6366 0.0167 8 6 6.0236 3.8284 -0.8615 9 6 6.0982 2.9019 1.4512 10 6 6.3317 1.3815 -0.5087 11 6 5.8233 0.1610 0.2713 12 1 5.9954 0.3047 1.3380 13 6 6.5340 -1.0813 -0.2008 14 1 7.2779 -1.0143 -0.9809 15 6 6.2354 -2.3031 0.3641 16 7 6.8553 -3.3872 -0.0483 17 14 4.9493 -2.4187 1.7139 18 1 3.6143 -2.6522 1.1070 19 1 5.2844 -3.5453 2.6216 20 1 4.9270 -1.1506 2.4863 21 6 4.3378 0.0388 0.0071 22 8 3.8244 -1.0410 -0.1965 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 3.5321 3.3663 -0.0106 27 1 5.5547 4.7327 -0.4736 28 1 7.1070 3.9488 -0.8544 29 1 5.6846 3.6526 -1.8824 30 1 5.8127 2.0629 2.0856 31 1 7.1819 3.0180 1.4688 32 1 5.6287 3.8135 1.8210 33 1 6.1065 1.2567 -1.5677 34 1 7.4090 1.4781 -0.3742 35 1 6.6449 -4.2468 0.3489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772574507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:08 Heat of formation + Delta-G solvation = -129.875346 kcal Electronic energy + Delta-G solvation = -19488.435083 eV Core-core repulsion = 16451.230021 eV Total energy + Delta-G solvation = -3037.205062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87855 -40.65134 -38.72930 -37.53703 -35.02595 -33.26965 -32.53068 -28.86368 -28.08638 -27.20266 -25.69693 -24.62208 -22.06390 -21.48898 -19.24117 -18.69068 -18.44343 -17.78449 -17.45067 -16.54080 -16.39544 -16.11790 -15.49763 -15.24953 -14.81392 -14.55217 -14.47604 -14.19857 -13.86265 -13.26705 -13.13307 -13.00208 -12.86783 -12.42244 -12.33418 -12.21205 -12.13318 -11.91682 -11.86690 -11.76591 -11.27648 -11.16480 -10.92794 -10.52966 -10.10832 -8.30715 -6.38756 -0.41517 0.97502 1.26069 1.41895 1.53831 1.68925 2.11051 2.38315 2.96367 3.33749 3.44895 3.72722 3.91771 3.99832 4.15042 4.18373 4.24122 4.51176 4.56589 4.58041 4.67005 4.78225 4.85218 4.94388 5.05690 5.12491 5.18314 5.19546 5.27636 5.39282 5.45363 5.53885 5.59730 6.19319 6.56389 6.67090 6.79622 7.32413 8.82080 Molecular weight = 252.12amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.012249 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.837623 B = 2285.343005 C = 3636.649760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.514 3.486 4 O -0.530 6.530 5 C -0.275 4.275 6 C 0.073 3.927 7 C -0.056 4.056 8 C -0.134 4.134 9 C -0.139 4.139 10 C -0.083 4.083 11 C -0.028 4.028 12 H 0.074 0.926 13 C -0.516 4.516 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.940 5.940 17 Si 0.945 3.055 18 H -0.271 1.271 19 H -0.309 1.309 20 H -0.258 1.258 21 C 0.362 3.638 22 O -0.454 6.454 23 H 0.120 0.880 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.163 0.837 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 16.786 2.293 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.361 3.639 4 O -0.423 6.423 5 C -0.277 4.277 6 C 0.054 3.946 7 C -0.056 4.056 8 C -0.191 4.191 9 C -0.196 4.196 10 C -0.120 4.120 11 C -0.047 4.047 12 H 0.092 0.908 13 C -0.553 4.553 14 H 0.068 0.932 15 C -0.162 4.162 16 N -0.580 5.580 17 Si 0.776 3.224 18 H -0.199 1.199 19 H -0.238 1.238 20 H -0.183 1.183 21 C 0.241 3.759 22 O -0.331 6.331 23 H 0.138 0.862 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.180 0.820 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.831 16.317 2.192 17.824 hybrid contribution -0.902 -1.064 0.321 1.431 sum -7.732 15.253 2.513 17.284 Atomic orbital electron populations 1.23595 0.74583 1.05400 1.03104 1.86818 1.25210 1.32176 1.83237 1.21285 0.89325 0.81454 0.71796 1.90747 1.66996 1.35964 1.48557 1.21596 0.89952 0.97987 1.18176 1.24715 0.98033 0.95837 0.75990 1.20011 0.88523 0.97611 0.99489 1.21897 1.03511 0.95222 0.98454 1.21938 1.03363 1.02380 0.91930 1.21591 1.01323 0.90400 0.98694 1.19966 0.88865 0.96556 0.99342 0.90842 1.20960 1.21922 0.91148 1.21291 0.93216 1.25723 0.96357 0.95535 0.98616 1.70006 1.43906 0.99480 1.44618 0.85829 0.80962 0.77527 0.78050 1.19859 1.23849 1.18281 1.24250 0.93153 0.86900 0.71567 1.90397 1.75393 1.31191 1.36120 0.86202 0.91055 0.91002 0.82012 0.89587 0.89953 0.92412 0.93767 0.89420 0.89503 0.92638 0.89192 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.90 16 2 O -0.36 -13.95 8.95 -49.78 -0.45 -14.39 16 3 C 0.51 19.20 7.89 70.31 0.55 19.76 16 4 O -0.53 -18.92 15.98 19.91 0.32 -18.61 16 5 C -0.27 -10.04 5.91 -19.22 -0.11 -10.16 16 6 C 0.07 1.94 8.07 24.61 0.20 2.13 16 7 C -0.06 -1.31 0.75 -53.22 -0.04 -1.35 16 8 C -0.13 -2.09 8.38 71.98 0.60 -1.49 16 9 C -0.14 -2.76 8.14 71.98 0.59 -2.17 16 10 C -0.08 -2.71 3.91 30.69 0.12 -2.59 16 11 C -0.03 -1.26 1.75 -11.90 -0.02 -1.28 16 12 H 0.07 3.17 5.52 -2.39 -0.01 3.16 16 13 C -0.52 -29.35 8.97 25.60 0.23 -29.12 16 14 H 0.05 3.04 8.00 -2.91 -0.02 3.01 16 15 C 0.04 2.23 5.18 84.66 0.44 2.67 16 16 N -0.94 -60.88 13.96 21.45 0.30 -60.58 16 17 Si 0.95 50.52 24.09 68.60 1.65 52.17 16 18 H -0.27 -15.27 6.13 99.48 0.61 -14.66 16 19 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16 20 H -0.26 -12.52 6.51 99.48 0.65 -11.88 16 21 C 0.36 16.63 5.64 28.33 0.16 16.79 16 22 O -0.45 -24.61 10.59 16.21 0.17 -24.44 16 23 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.16 3.39 7.42 -2.91 -0.02 3.37 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.08 6.60 -2.39 -0.02 1.06 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 2.75 8.13 -2.39 -0.02 2.73 16 35 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -77.28 285.72 6.84 -70.44 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 0.93 Total: 0.31 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 3.91 Total: -4.90 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: 0.04 Total: -57.44 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.65 Total: 52.17 kcal Total: -77.28 6.84 -70.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772574507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.436 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds