Wall clock time and date at job start Mon Mar 30 2020 07:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00517 * 2 1 4 4 H 1.48501 * 109.46839 * 270.00108 * 3 2 1 5 5 H 1.48495 * 109.47002 * 29.99707 * 3 2 1 6 6 H 1.48497 * 109.47357 * 150.00129 * 3 2 1 7 7 C 1.37885 * 119.99459 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00142 * 0.02562 * 7 2 1 10 10 N 1.49603 * 113.45963 * 62.43601 * 9 7 2 11 11 C 1.49413 * 100.89171 * 162.11048 * 10 9 7 12 12 H 1.08999 * 111.30321 * 202.08943 * 11 10 9 13 13 C 1.53005 * 107.18831 * 79.56235 * 11 10 9 14 14 C 1.50696 * 110.83823 * 315.41952 * 13 11 10 15 15 C 1.38633 * 119.15331 * 185.04203 * 14 13 11 16 16 C 1.38101 * 120.09994 * 181.10481 * 15 14 13 17 17 C 1.38255 * 120.23272 * 359.91085 * 16 15 14 18 18 C 1.38318 * 119.77212 * 359.82412 * 17 16 15 19 19 C 1.37922 * 121.48682 * 5.69282 * 14 13 11 20 20 C 1.50036 * 104.03522 * 321.96472 * 11 10 9 21 21 C 1.38167 * 131.00571 * 203.34801 * 20 11 10 22 22 C 1.38984 * 116.90274 * 179.15474 * 21 20 11 23 23 C 1.37971 * 121.75066 * 0.02562 * 22 21 20 24 24 C 1.39077 * 121.54291 * 0.33120 * 23 22 21 25 25 C 1.37879 * 116.78215 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99473 * 359.97438 * 1 2 3 27 27 H 1.00892 * 111.00167 * 44.41076 * 10 9 7 28 28 H 1.08998 * 109.20516 * 75.77359 * 13 11 10 29 29 H 1.09005 * 109.19992 * 195.07548 * 13 11 10 30 30 H 1.08003 * 119.95008 * 1.08187 * 15 14 13 31 31 H 1.08003 * 119.87997 * 179.97438 * 16 15 14 32 32 H 1.08008 * 120.11620 * 179.80006 * 17 16 15 33 33 H 1.08003 * 120.11192 * 180.02562 * 18 17 16 34 34 H 1.08008 * 121.54605 * 359.15544 * 21 20 11 35 35 H 1.08003 * 119.12406 * 179.97438 * 22 21 20 36 36 H 1.08003 * 119.23283 * 180.34678 * 23 22 21 37 37 H 1.08004 * 121.61461 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 0.4036 -2.6976 -1.2163 11 6 0.1718 -4.1727 -1.1615 12 1 -0.0900 -4.5691 -2.1425 13 6 -0.9361 -4.4184 -0.1353 14 6 -0.7071 -3.5979 1.1078 15 6 -1.5520 -3.7670 2.1938 16 6 -1.3740 -3.0090 3.3344 17 6 -0.3524 -2.0798 3.4003 18 6 0.4952 -1.9131 2.3201 19 6 0.3148 -2.6747 1.1834 20 6 1.4802 -4.7290 -0.6822 21 6 2.0376 -5.9853 -0.8241 22 6 3.2967 -6.1810 -0.2690 23 6 3.9628 -5.1710 0.3941 24 6 3.4025 -3.9071 0.5456 25 6 2.1504 -3.7133 0.0019 26 1 -0.4849 0.8401 0.0004 27 1 0.9064 -2.4414 -2.0527 28 1 -1.8967 -4.1463 -0.5726 29 1 -0.9505 -5.4755 0.1305 30 1 -2.3508 -4.4923 2.1476 31 1 -2.0346 -3.1434 4.1782 32 1 -0.2169 -1.4857 4.2921 33 1 1.2953 -1.1891 2.3658 34 1 1.5189 -6.7784 -1.3422 35 1 3.7658 -7.1497 -0.3585 36 1 4.9423 -5.3663 0.8050 37 1 3.9227 -3.1158 1.0649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026016962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:24 Heat of formation + Delta-G solvation = 73.474926 kcal Electronic energy + Delta-G solvation = -21680.084376 eV Core-core repulsion = 18772.961066 eV Total energy + Delta-G solvation = -2907.123310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59066 -37.79769 -35.66026 -33.46124 -31.36509 -30.62863 -29.54620 -28.66843 -28.01364 -25.57595 -23.26023 -22.70147 -21.42608 -20.97637 -19.76223 -18.62836 -16.84266 -15.78136 -15.23134 -15.04997 -14.84136 -14.32256 -13.99711 -13.68027 -13.58284 -13.15231 -12.99837 -12.59230 -12.25894 -11.99459 -11.83663 -11.62415 -11.34763 -11.20176 -10.97323 -10.85199 -10.52535 -10.37846 -10.20343 -9.89318 -9.71979 -9.26949 -8.62511 -8.25271 -7.90209 -7.69664 -7.54681 -7.42348 -6.04154 -4.23639 1.90237 1.98592 2.41108 2.55531 3.24666 3.33227 3.34586 4.31060 4.36685 4.83584 5.04274 5.22023 5.36296 5.46810 5.50687 5.59142 5.65471 5.79118 5.92785 5.94781 5.99361 6.08142 6.19674 6.28583 6.40813 6.48865 6.53804 6.55413 6.73299 6.82923 6.95694 7.03321 7.07548 7.10310 7.23333 7.43807 7.55669 7.59700 7.71490 7.73784 7.97286 8.01402 8.19886 8.65631 8.83304 9.46023 10.96652 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.009707 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.265640 B = 2883.822848 C = 3781.978511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.087 3.913 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.297 3.703 10 N -0.613 5.613 11 C 0.087 3.913 12 H 0.078 0.922 13 C -0.047 4.047 14 C -0.079 4.079 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.069 4.069 19 C 0.006 3.994 20 C -0.133 4.133 21 C -0.106 4.106 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.094 4.094 25 C -0.081 4.081 26 H 0.261 0.739 27 H 0.325 0.675 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -8.377 1.251 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.123 4.123 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.208 3.792 10 N -0.238 5.238 11 C -0.024 4.024 12 H 0.096 0.904 13 C -0.085 4.085 14 C -0.079 4.079 15 C -0.158 4.158 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.087 4.087 19 C 0.005 3.995 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.113 4.113 25 C -0.083 4.083 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.415 -7.962 1.474 8.108 hybrid contribution 1.208 0.509 -0.212 1.327 sum 1.623 -7.453 1.262 7.731 Atomic orbital electron populations 1.70127 1.05492 1.26313 1.44290 1.24976 0.94707 0.98706 0.93889 0.86732 0.80078 0.83771 0.78320 1.20540 1.21116 1.19756 1.20523 0.92414 0.88249 1.55926 0.91692 1.17770 0.84997 0.90078 0.86320 1.65381 1.45343 1.07653 1.05412 1.21355 0.91282 0.92229 0.97499 0.90375 1.20197 0.97998 0.97336 0.92929 1.19505 0.96136 0.97987 0.94319 1.20761 0.99837 1.01028 0.94157 1.20701 0.99168 0.98571 0.97675 1.21020 0.97080 0.99407 0.98717 1.20965 0.98622 0.97283 0.91863 1.19760 0.93750 0.91435 0.94566 1.21458 0.97636 0.94207 1.00141 1.20703 0.95332 0.95566 1.00853 1.20904 0.95784 0.98601 1.00696 1.21106 0.99664 0.93607 1.00362 1.20860 0.94644 0.96119 0.99647 1.22039 0.94213 0.97853 0.94149 0.92924 0.85977 0.90783 0.92325 0.87892 0.87983 0.87776 0.85780 0.86345 0.87368 0.87208 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.29 11.83 55.43 0.66 -21.63 16 2 C 0.09 2.21 4.54 -17.82 -0.08 2.13 16 3 Si 0.88 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.42 7.31 -34.44 -0.25 -13.68 16 8 H 0.06 1.63 7.42 -52.49 -0.39 1.24 16 9 C 0.30 6.99 0.77 -132.78 -0.10 6.89 16 10 N -0.61 -13.99 6.77 -93.65 -0.63 -14.63 16 11 C 0.09 1.69 4.19 -67.78 -0.28 1.41 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.05 -0.90 5.42 -27.88 -0.15 -1.05 16 14 C -0.08 -1.72 5.60 -104.59 -0.59 -2.30 16 15 C -0.14 -2.76 9.71 -39.49 -0.38 -3.14 16 16 C -0.14 -2.75 10.03 -39.63 -0.40 -3.15 16 17 C -0.14 -2.95 10.06 -39.55 -0.40 -3.35 16 18 C -0.07 -1.60 8.44 -39.64 -0.33 -1.93 16 19 C 0.01 0.14 3.96 -104.25 -0.41 -0.27 16 20 C -0.13 -2.57 5.40 -104.46 -0.56 -3.13 16 21 C -0.11 -1.76 10.26 -39.33 -0.40 -2.17 16 22 C -0.14 -2.23 9.96 -39.40 -0.39 -2.62 16 23 C -0.13 -2.15 9.97 -39.37 -0.39 -2.54 16 24 C -0.09 -1.83 9.79 -39.40 -0.39 -2.22 16 25 C -0.08 -1.72 4.93 -104.05 -0.51 -2.24 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.33 7.38 8.83 -39.30 -0.35 7.04 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 33 H 0.12 2.98 6.65 -52.48 -0.35 2.63 16 34 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.13 2.41 7.91 -52.48 -0.42 2.00 16 LS Contribution 301.69 15.07 4.55 4.55 Total: -1.00 -27.92 301.69 -10.93 -38.85 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.44 Total: 11.31 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -6.03 Total: -33.37 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.02 Total: -36.26 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.92 -10.93 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026016962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.320 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds