Wall clock time and date at job start Mon Mar 30 2020 07:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00517 * 2 1 4 4 H 1.48501 * 109.46839 * 270.00108 * 3 2 1 5 5 H 1.48495 * 109.47002 * 29.99707 * 3 2 1 6 6 H 1.48497 * 109.47357 * 150.00129 * 3 2 1 7 7 C 1.37885 * 119.99459 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99693 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00142 * 0.02562 * 7 2 1 10 10 N 1.49603 * 113.45963 * 62.43601 * 9 7 2 11 11 C 1.49413 * 100.89171 * 162.11048 * 10 9 7 12 12 H 1.08999 * 111.30321 * 202.08943 * 11 10 9 13 13 C 1.53005 * 107.18831 * 79.56235 * 11 10 9 14 14 C 1.50696 * 110.83823 * 315.41952 * 13 11 10 15 15 C 1.38633 * 119.15331 * 185.04203 * 14 13 11 16 16 C 1.38101 * 120.09994 * 181.10481 * 15 14 13 17 17 C 1.38255 * 120.23272 * 359.91085 * 16 15 14 18 18 C 1.38318 * 119.77212 * 359.82412 * 17 16 15 19 19 C 1.37922 * 121.48682 * 5.69282 * 14 13 11 20 20 C 1.50036 * 104.03522 * 321.96472 * 11 10 9 21 21 C 1.38167 * 131.00571 * 203.34801 * 20 11 10 22 22 C 1.38984 * 116.90274 * 179.15474 * 21 20 11 23 23 C 1.37971 * 121.75066 * 0.02562 * 22 21 20 24 24 C 1.39077 * 121.54291 * 0.33120 * 23 22 21 25 25 C 1.37879 * 116.78215 * 0.02562 * 24 23 22 26 26 H 0.97001 * 119.99473 * 359.97438 * 1 2 3 27 27 H 1.00892 * 111.00167 * 44.41076 * 10 9 7 28 28 H 1.08998 * 109.20516 * 75.77359 * 13 11 10 29 29 H 1.09005 * 109.19992 * 195.07548 * 13 11 10 30 30 H 1.08003 * 119.95008 * 1.08187 * 15 14 13 31 31 H 1.08003 * 119.87997 * 179.97438 * 16 15 14 32 32 H 1.08008 * 120.11620 * 179.80006 * 17 16 15 33 33 H 1.08003 * 120.11192 * 180.02562 * 18 17 16 34 34 H 1.08008 * 121.54605 * 359.15544 * 21 20 11 35 35 H 1.08003 * 119.12406 * 179.97438 * 22 21 20 36 36 H 1.08003 * 119.23283 * 180.34678 * 23 22 21 37 37 H 1.08004 * 121.61461 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 0.4036 -2.6976 -1.2163 11 6 0.1718 -4.1727 -1.1615 12 1 -0.0900 -4.5691 -2.1425 13 6 -0.9361 -4.4184 -0.1353 14 6 -0.7071 -3.5979 1.1078 15 6 -1.5520 -3.7670 2.1938 16 6 -1.3740 -3.0090 3.3344 17 6 -0.3524 -2.0798 3.4003 18 6 0.4952 -1.9131 2.3201 19 6 0.3148 -2.6747 1.1834 20 6 1.4802 -4.7290 -0.6822 21 6 2.0376 -5.9853 -0.8241 22 6 3.2967 -6.1810 -0.2690 23 6 3.9628 -5.1710 0.3941 24 6 3.4025 -3.9071 0.5456 25 6 2.1504 -3.7133 0.0019 26 1 -0.4849 0.8401 0.0004 27 1 0.9064 -2.4414 -2.0527 28 1 -1.8967 -4.1463 -0.5726 29 1 -0.9505 -5.4755 0.1305 30 1 -2.3508 -4.4923 2.1476 31 1 -2.0346 -3.1434 4.1782 32 1 -0.2169 -1.4857 4.2921 33 1 1.2953 -1.1891 2.3658 34 1 1.5189 -6.7784 -1.3422 35 1 3.7658 -7.1497 -0.3585 36 1 4.9423 -5.3663 0.8050 37 1 3.9227 -3.1158 1.0649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026016962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:23 Heat of formation + Delta-G solvation = 58.690541 kcal Electronic energy + Delta-G solvation = -21680.725475 eV Core-core repulsion = 18772.961066 eV Total energy + Delta-G solvation = -2907.764409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.10727 -39.28016 -37.13251 -35.22562 -33.06441 -32.10727 -31.08779 -30.13308 -29.55995 -27.40102 -24.85926 -24.18022 -22.89917 -22.56612 -21.24016 -20.18918 -18.58657 -17.23206 -16.92987 -16.63199 -16.45582 -15.88679 -15.46060 -15.23997 -15.08229 -14.67190 -14.47562 -14.14469 -13.97005 -13.51769 -13.30691 -13.13420 -12.92619 -12.80726 -12.72499 -12.44660 -12.23366 -11.95884 -11.75817 -11.44105 -11.30284 -11.01830 -10.56232 -9.62984 -9.43235 -9.26379 -9.17857 -8.99334 -7.99534 -6.22089 0.53760 0.59438 0.79969 0.98287 1.39604 1.43277 1.50170 2.43125 2.96162 3.19318 3.23145 3.73589 3.83568 4.09927 4.16771 4.24357 4.26634 4.31633 4.43447 4.46763 4.56660 4.73893 4.79508 4.82700 4.93123 5.02114 5.06560 5.08590 5.18433 5.38535 5.46758 5.51750 5.61259 5.69792 5.72667 5.73918 5.84985 5.94171 6.10375 6.22172 6.25180 6.38828 6.53154 6.89441 6.92581 7.49245 8.99879 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.009707 C = 0.007402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.265640 B = 2883.822848 C = 3781.978511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.052 3.948 3 Si 0.935 3.065 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.287 3.713 10 N -0.633 5.633 11 C 0.089 3.911 12 H 0.101 0.899 13 C -0.045 4.045 14 C -0.102 4.102 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.100 4.100 19 C -0.015 4.015 20 C -0.145 4.145 21 C -0.099 4.099 22 C -0.135 4.135 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.255 0.745 27 H 0.316 0.684 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -11.175 1.403 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.154 4.154 3 Si 0.761 3.239 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.069 0.931 9 C 0.198 3.802 10 N -0.257 5.257 11 C -0.022 4.022 12 H 0.119 0.881 13 C -0.082 4.082 14 C -0.102 4.102 15 C -0.159 4.159 16 C -0.160 4.160 17 C -0.169 4.169 18 C -0.118 4.118 19 C -0.017 4.017 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.153 4.153 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.115 4.115 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.098 -10.766 1.630 10.889 hybrid contribution 1.371 1.301 -0.230 1.904 sum 1.469 -9.464 1.400 9.680 Atomic orbital electron populations 1.70248 1.06501 1.26213 1.46058 1.25466 0.95215 1.00940 0.93771 0.85932 0.79056 0.80840 0.78027 1.20503 1.21234 1.19563 1.20726 0.92010 0.89969 1.55053 0.93063 1.17693 0.85787 0.90066 0.86688 1.65296 1.45101 1.10625 1.04699 1.21455 0.91767 0.90153 0.98824 0.88121 1.20248 0.97833 0.98366 0.91776 1.19912 0.95992 0.98157 0.96145 1.21195 0.99921 1.01276 0.93512 1.21117 0.98782 0.97364 0.98766 1.21298 0.96963 1.00050 0.98624 1.20922 0.99381 0.97976 0.93561 1.19887 0.94770 0.92474 0.94525 1.21523 0.97470 0.95048 1.00626 1.21161 0.95569 0.95065 0.99953 1.21378 0.95297 0.99823 0.98775 1.21425 1.00818 0.92418 0.99861 1.20964 0.94662 0.97556 1.00614 1.22008 0.95155 0.97903 0.96423 0.93595 0.87016 0.90437 0.89672 0.84582 0.84303 0.85758 0.88454 0.82833 0.83327 0.84329 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.92 11.83 21.45 0.25 -47.67 16 2 C 0.05 2.79 4.54 84.66 0.38 3.18 16 3 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -28.66 7.31 25.60 0.19 -28.48 16 8 H 0.05 2.75 7.42 -2.91 -0.02 2.73 16 9 C 0.29 13.97 0.77 1.26 0.00 13.97 16 10 N -0.63 -29.57 6.77 -450.22 -3.05 -32.61 16 11 C 0.09 3.34 4.19 43.47 0.18 3.52 16 12 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 13 C -0.05 -1.63 5.42 29.85 0.16 -1.47 16 14 C -0.10 -4.34 5.60 -19.85 -0.11 -4.45 16 15 C -0.14 -5.27 9.71 22.33 0.22 -5.06 16 16 C -0.14 -5.19 10.03 22.24 0.22 -4.97 16 17 C -0.15 -6.20 10.06 22.29 0.22 -5.97 16 18 C -0.10 -4.81 8.44 22.23 0.19 -4.63 16 19 C -0.02 -0.75 3.96 -19.62 -0.08 -0.82 16 20 C -0.15 -5.41 5.40 -19.76 -0.11 -5.52 16 21 C -0.10 -2.94 10.26 22.43 0.23 -2.71 16 22 C -0.13 -3.71 9.96 22.39 0.22 -3.49 16 23 C -0.13 -3.97 9.97 22.41 0.22 -3.74 16 24 C -0.12 -4.72 9.79 22.39 0.22 -4.50 16 25 C -0.11 -4.90 4.93 -19.49 -0.10 -5.00 16 26 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.32 14.93 8.83 -89.70 -0.79 14.14 16 28 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 32 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.10 5.04 6.65 -2.91 -0.02 5.02 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.11 4.62 7.91 -2.91 -0.02 4.59 16 Total: -1.00 -62.97 301.69 1.80 -61.17 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: 0.30 Total: 34.49 kcal Atomic # 6 Polarization: -62.41 SS G_CDS: 2.27 Total: -60.14 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.79 Total: -80.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -62.97 1.80 -61.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026016962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.859 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds