Wall clock time and date at job start Mon Mar 30 2020 07:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.40512 * 126.31197 * 59.68979 * 4 2 1 6 6 C 1.38458 * 125.83028 * 0.02562 * 5 4 2 7 7 H 1.08004 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.46557 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.29541 * 120.00133 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47356 * 60.00621 * 10 8 6 12 12 H 1.48500 * 109.47209 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47715 * 300.00410 * 10 8 6 14 14 N 1.38533 * 108.33976 * 179.83213 * 5 4 2 15 15 H 0.97000 * 125.60122 * 180.16385 * 14 5 4 16 16 C 1.37659 * 108.79577 * 0.43746 * 14 5 4 17 17 C 1.39060 * 132.64728 * 179.73099 * 16 14 5 18 18 C 1.37863 * 119.92194 * 180.02562 * 17 16 14 19 19 N 1.48008 * 119.60569 * 179.97438 * 18 17 16 20 20 O 1.31702 * 119.99925 * 179.97438 * 19 18 17 21 21 O 1.31701 * 120.00603 * 359.97438 * 19 18 17 22 22 C 1.39153 * 120.78347 * 359.95974 * 18 17 16 23 23 C 1.36217 * 120.64297 * 0.03857 * 22 18 17 24 24 C 1.40180 * 126.31410 * 240.00250 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 0.96998 * 119.99723 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04016 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.67465 * 180.02562 * 22 18 17 35 35 H 1.07998 * 120.10608 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7710 -0.3515 -2.5636 6 6 1.0028 0.7234 -2.9778 7 1 0.5434 1.3724 -2.2469 8 6 0.8139 0.9812 -4.4081 9 7 1.3653 0.2031 -5.2849 10 14 -0.2231 2.4309 -4.9669 11 1 0.3688 3.6912 -4.4505 12 1 -0.2580 2.4718 -6.4509 13 1 -1.6048 2.2822 -4.4437 14 7 2.4167 -1.2540 -3.3927 15 1 2.4053 -1.2380 -4.3625 16 6 3.0721 -2.1810 -2.6142 17 6 3.8547 -3.2878 -2.9250 18 6 4.3954 -4.0534 -1.9140 19 7 5.2267 -5.2302 -2.2527 20 8 5.7475 -5.9667 -1.2930 21 8 5.4458 -5.5408 -3.5136 22 6 4.1690 -3.7328 -0.5789 23 6 3.4068 -2.6548 -0.2434 24 6 2.8415 -1.8549 -1.2562 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.2399 0.3735 -6.2315 33 1 4.0380 -3.5477 -3.9570 34 1 4.6016 -4.3448 0.1987 35 1 3.2364 -2.4142 0.7956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587647258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:42 Heat of formation + Delta-G solvation = 33.187903 kcal Electronic energy + Delta-G solvation = -20686.492510 eV Core-core repulsion = 17459.510350 eV Total energy + Delta-G solvation = -3226.982160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.47794 -38.06571 -36.08666 -34.86032 -34.10127 -33.28697 -30.85835 -29.66625 -28.14343 -26.95739 -26.51751 -24.13498 -22.06181 -21.51871 -20.73799 -18.67717 -18.18108 -17.35074 -16.92604 -16.12164 -15.58535 -15.01381 -14.88712 -14.02283 -13.64026 -13.56795 -13.46502 -13.17312 -13.08253 -12.46418 -12.42704 -11.98418 -11.64873 -11.60968 -11.53048 -10.99820 -10.98769 -10.79601 -10.57678 -10.27933 -10.13354 -10.11960 -9.99407 -9.84903 -9.76533 -9.07466 -7.96028 -7.91423 -7.14068 -5.07815 0.31841 1.89131 2.37204 2.38298 2.50616 2.51354 2.56849 3.18318 3.24887 4.27008 4.35692 4.51507 5.29175 5.55321 5.56359 5.63187 5.89547 5.89860 5.93038 5.95772 6.11250 6.15825 6.19211 6.33806 6.35610 6.44237 6.52924 6.66916 6.73531 6.88866 6.90274 6.94704 7.01111 7.14684 7.22800 7.46878 7.66616 7.85934 7.96062 8.17887 8.81858 9.00088 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.005692 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.684512 B = 4918.228568 C = 6093.144150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.005 3.995 3 C -0.145 4.145 4 C -0.298 4.298 5 C 0.307 3.693 6 C -0.398 4.398 7 H 0.123 0.877 8 C 0.066 3.934 9 N -0.763 5.763 10 Si 0.944 3.056 11 H -0.251 1.251 12 H -0.269 1.269 13 H -0.251 1.251 14 N -0.601 5.601 15 H 0.427 0.573 16 C 0.042 3.958 17 C -0.049 4.049 18 C -0.082 4.082 19 N 0.031 4.969 20 O -0.268 6.268 21 O -0.271 6.271 22 C -0.057 4.057 23 C -0.154 4.154 24 C 0.010 3.990 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.311 0.689 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 7.739 2.382 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.302 4.302 5 C 0.195 3.805 6 C -0.428 4.428 7 H 0.141 0.859 8 C -0.163 4.163 9 N -0.386 5.386 10 Si 0.765 3.235 11 H -0.175 1.175 12 H -0.193 1.193 13 H -0.175 1.175 14 N -0.219 5.219 15 H 0.275 0.725 16 C -0.063 4.063 17 C -0.072 4.072 18 C -0.178 4.178 19 N 0.475 4.525 20 O -0.438 6.438 21 O -0.440 6.440 22 C -0.077 4.077 23 C -0.174 4.174 24 C 0.005 3.995 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.597 7.911 2.086 9.912 hybrid contribution 0.022 -0.044 -1.074 1.076 sum -5.575 7.866 1.012 9.694 Atomic orbital electron populations 1.21909 0.96189 1.01214 1.00977 1.19009 0.94105 0.94213 0.94067 1.21900 1.00686 0.96706 1.00957 1.19477 1.15032 1.02926 0.92755 1.18016 0.87780 0.87300 0.87394 1.20630 1.23169 1.07830 0.91200 0.85901 1.27929 0.94065 0.98131 0.96186 1.68266 1.30943 1.33937 1.05483 0.85707 0.80214 0.79136 0.78460 1.17503 1.19339 1.17509 1.42757 1.45423 1.24122 1.09568 0.72509 1.17912 1.02280 0.94831 0.91325 1.19334 0.96502 0.92852 0.98530 1.19208 1.10570 0.93248 0.94802 1.50138 0.98771 1.01727 1.01828 1.96139 1.56721 1.52104 1.38816 1.96153 1.70372 1.79247 0.98275 1.20039 0.97550 0.97077 0.93065 1.19943 1.02824 0.96560 0.98094 1.18297 0.95245 0.94429 0.91572 0.91777 0.94101 0.93387 0.92298 0.94107 0.93389 0.91808 0.87543 0.85446 0.85363 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.03 37.16 0.34 -1.84 16 2 C 0.01 0.08 3.10 -91.77 -0.28 -0.20 16 3 C -0.15 -2.17 9.03 37.15 0.34 -1.83 16 4 C -0.30 -5.85 4.98 -103.03 -0.51 -6.36 16 5 C 0.31 6.28 6.58 -83.90 -0.55 5.72 16 6 C -0.40 -7.46 7.88 -36.15 -0.28 -7.75 16 7 H 0.12 2.10 4.61 -52.48 -0.24 1.86 16 8 C 0.07 1.15 5.67 -15.17 -0.09 1.07 16 9 N -0.76 -13.93 10.74 55.99 0.60 -13.33 16 10 Si 0.94 13.07 29.64 -169.99 -5.04 8.03 16 11 H -0.25 -3.47 7.11 56.52 0.40 -3.07 16 12 H -0.27 -3.70 7.11 56.52 0.40 -3.30 16 13 H -0.25 -3.48 7.11 56.52 0.40 -3.07 16 14 N -0.60 -12.70 5.86 -8.22 -0.05 -12.75 16 15 H 0.43 8.83 6.25 -40.82 -0.26 8.57 16 16 C 0.04 0.90 7.23 -83.68 -0.61 0.30 16 17 C -0.05 -1.05 9.59 -39.41 -0.38 -1.43 16 18 C -0.08 -1.83 6.89 -79.75 -0.55 -2.38 16 19 N 0.03 0.76 4.98 34.06 0.17 0.93 16 20 O -0.27 -6.49 19.12 -31.57 -0.60 -7.10 16 21 O -0.27 -6.73 19.11 -31.57 -0.60 -7.33 16 22 C -0.06 -1.13 9.49 -39.97 -0.38 -1.51 16 23 C -0.15 -2.92 9.95 -39.30 -0.39 -3.31 16 24 C 0.01 0.20 6.08 -106.90 -0.65 -0.45 16 25 H 0.06 0.98 5.68 -51.93 -0.29 0.68 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.93 7.74 -51.93 -0.40 0.52 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.97 5.74 -51.93 -0.30 0.68 16 32 H 0.31 5.02 8.27 -40.82 -0.34 4.68 16 33 H 0.13 2.67 7.54 -52.49 -0.40 2.27 16 34 H 0.13 2.36 7.54 -52.49 -0.40 1.96 16 35 H 0.12 2.00 7.80 -52.49 -0.41 1.59 16 LS Contribution 300.02 15.07 4.52 4.52 Total: -1.00 -24.29 300.02 -8.52 -32.81 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -3.52 Total: 14.19 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -4.00 Total: -19.98 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.72 Total: -25.14 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -1.21 Total: -14.43 kcal Atomic # 14 Polarization: 13.07 SS G_CDS: -5.04 Total: 8.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -24.29 -8.52 -32.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587647258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.997 kcal (2) G-P(sol) polarization free energy of solvation -24.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds