Wall clock time and date at job start Mon Mar 30 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 C 1.40512 * 126.31197 * 59.68979 * 4 2 1 6 6 C 1.38458 * 125.83028 * 0.02562 * 5 4 2 7 7 H 1.08004 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.46557 * 119.99912 * 179.97438 * 6 5 4 9 9 N 1.29541 * 120.00133 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47356 * 60.00621 * 10 8 6 12 12 H 1.48500 * 109.47209 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47715 * 300.00410 * 10 8 6 14 14 N 1.38533 * 108.33976 * 179.83213 * 5 4 2 15 15 H 0.97000 * 125.60122 * 180.16385 * 14 5 4 16 16 C 1.37659 * 108.79577 * 0.43746 * 14 5 4 17 17 C 1.39060 * 132.64728 * 179.73099 * 16 14 5 18 18 C 1.37863 * 119.92194 * 180.02562 * 17 16 14 19 19 N 1.48008 * 119.60569 * 179.97438 * 18 17 16 20 20 O 1.31702 * 119.99925 * 179.97438 * 19 18 17 21 21 O 1.31701 * 120.00603 * 359.97438 * 19 18 17 22 22 C 1.39153 * 120.78347 * 359.95974 * 18 17 16 23 23 C 1.36217 * 120.64297 * 0.03857 * 22 18 17 24 24 C 1.40180 * 126.31410 * 240.00250 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 0.96998 * 119.99723 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04016 * 359.97438 * 17 16 14 34 34 H 1.08000 * 119.67465 * 180.02562 * 22 18 17 35 35 H 1.07998 * 120.10608 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 6 1.7710 -0.3515 -2.5636 6 6 1.0028 0.7234 -2.9778 7 1 0.5434 1.3724 -2.2469 8 6 0.8139 0.9812 -4.4081 9 7 1.3653 0.2031 -5.2849 10 14 -0.2231 2.4309 -4.9669 11 1 0.3688 3.6912 -4.4505 12 1 -0.2580 2.4718 -6.4509 13 1 -1.6048 2.2822 -4.4437 14 7 2.4167 -1.2540 -3.3927 15 1 2.4053 -1.2380 -4.3625 16 6 3.0721 -2.1810 -2.6142 17 6 3.8547 -3.2878 -2.9250 18 6 4.3954 -4.0534 -1.9140 19 7 5.2267 -5.2302 -2.2527 20 8 5.7475 -5.9667 -1.2930 21 8 5.4458 -5.5408 -3.5136 22 6 4.1690 -3.7328 -0.5789 23 6 3.4068 -2.6548 -0.2434 24 6 2.8415 -1.8549 -1.2562 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.2399 0.3735 -6.2315 33 1 4.0380 -3.5477 -3.9570 34 1 4.6016 -4.3448 0.1987 35 1 3.2364 -2.4142 0.7956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587647258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:41 Heat of formation + Delta-G solvation = 22.499661 kcal Electronic energy + Delta-G solvation = -20686.955987 eV Core-core repulsion = 17459.510350 eV Total energy + Delta-G solvation = -3227.445637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10300 -39.63744 -37.64365 -36.26615 -35.65309 -34.90411 -32.40380 -31.28630 -29.72874 -28.58945 -27.69038 -25.73395 -23.58260 -22.99989 -22.33073 -20.20899 -19.73352 -18.92155 -18.53500 -17.61539 -17.13744 -16.51769 -16.43738 -15.46076 -15.24590 -15.01658 -14.93441 -14.55462 -14.45565 -13.88163 -13.66837 -13.28817 -13.17866 -12.96404 -12.75347 -12.46408 -12.38710 -12.07980 -11.91663 -11.82678 -11.72673 -11.55321 -11.48774 -11.45701 -11.17158 -10.66693 -9.56520 -9.42468 -8.76478 -6.64387 -1.49515 0.33447 0.80918 0.83308 1.24120 1.34606 1.54802 1.90007 2.01180 2.64112 2.75780 2.92084 3.73059 4.04460 4.15858 4.22674 4.35855 4.38641 4.48017 4.59480 4.64752 4.70833 4.82231 5.00942 5.07738 5.12067 5.23161 5.25753 5.35518 5.36830 5.42498 5.49159 5.64177 5.69139 5.75090 5.92993 6.06637 6.24094 6.33669 6.52241 7.16188 7.53217 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.005692 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.684512 B = 4918.228568 C = 6093.144150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 C -0.142 4.142 4 C -0.250 4.250 5 C 0.265 3.735 6 C -0.359 4.359 7 H 0.151 0.849 8 C 0.030 3.970 9 N -0.767 5.767 10 Si 1.012 2.988 11 H -0.243 1.243 12 H -0.268 1.268 13 H -0.243 1.243 14 N -0.616 5.616 15 H 0.426 0.574 16 C 0.047 3.953 17 C -0.078 4.078 18 C -0.091 4.091 19 N 0.040 4.960 20 O -0.335 6.335 21 O -0.362 6.362 22 C -0.061 4.061 23 C -0.137 4.137 24 C -0.023 4.023 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.326 0.674 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 13.684 3.608 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.254 4.254 5 C 0.155 3.845 6 C -0.389 4.389 7 H 0.168 0.832 8 C -0.199 4.199 9 N -0.390 5.390 10 Si 0.828 3.172 11 H -0.166 1.166 12 H -0.192 1.192 13 H -0.166 1.166 14 N -0.235 5.235 15 H 0.273 0.727 16 C -0.059 4.059 17 C -0.102 4.102 18 C -0.195 4.195 19 N 0.452 4.548 20 O -0.486 6.486 21 O -0.507 6.507 22 C -0.081 4.081 23 C -0.158 4.158 24 C -0.027 4.027 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.634 13.602 3.259 16.984 hybrid contribution 0.563 -0.805 -1.521 1.811 sum -9.072 12.797 1.738 15.782 Atomic orbital electron populations 1.21874 0.94451 1.01195 1.02425 1.19303 0.95485 0.95098 0.92590 1.21864 1.00224 0.95415 1.02404 1.20263 1.10510 1.00682 0.93954 1.18571 0.89424 0.88514 0.87991 1.21432 1.18917 1.05616 0.92920 0.83214 1.28949 0.94884 1.00496 0.95542 1.68284 1.29563 1.34296 1.06819 0.84707 0.78655 0.75664 0.78137 1.16630 1.19171 1.16646 1.42820 1.46444 1.24654 1.09602 0.72699 1.18127 1.01277 0.94290 0.92225 1.19230 0.98689 0.94135 0.98167 1.19510 1.10931 0.93064 0.95948 1.50114 1.00622 1.02844 1.01205 1.96050 1.59676 1.54016 1.38828 1.96079 1.74175 1.81357 0.99103 1.20242 0.97857 0.97693 0.92349 1.20239 1.01114 0.95150 0.99323 1.18672 0.96805 0.95697 0.91561 0.92058 0.90996 0.94228 0.90923 0.91002 0.94225 0.92091 0.85948 0.86571 0.84292 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.03 71.98 0.65 -2.73 16 2 C -0.01 -0.16 3.10 -11.54 -0.04 -0.19 16 3 C -0.14 -3.38 9.03 71.98 0.65 -2.73 16 4 C -0.25 -8.87 4.98 -18.84 -0.09 -8.96 16 5 C 0.27 9.94 6.58 38.69 0.25 10.19 16 6 C -0.36 -11.62 7.88 24.49 0.19 -11.43 16 7 H 0.15 4.09 4.61 -2.91 -0.01 4.07 16 8 C 0.03 0.91 5.67 87.20 0.49 1.40 16 9 N -0.77 -25.36 10.74 23.22 0.25 -25.11 16 10 Si 1.01 21.51 29.64 68.60 2.03 23.54 16 11 H -0.24 -4.97 7.11 99.48 0.71 -4.26 16 12 H -0.27 -5.73 7.11 99.48 0.71 -5.02 16 13 H -0.24 -4.98 7.11 99.48 0.71 -4.27 16 14 N -0.62 -25.32 5.86 -179.93 -1.06 -26.38 16 15 H 0.43 17.31 6.25 -92.71 -0.58 16.73 16 16 C 0.05 2.03 7.23 39.24 0.28 2.31 16 17 C -0.08 -3.64 9.59 22.38 0.21 -3.42 16 18 C -0.09 -4.37 6.89 36.51 0.25 -4.12 16 19 N 0.04 2.17 4.98 -46.16 -0.23 1.94 16 20 O -0.33 -18.31 19.12 3.51 0.07 -18.25 16 21 O -0.36 -20.72 19.11 3.51 0.07 -20.65 16 22 C -0.06 -2.52 9.49 22.02 0.21 -2.31 16 23 C -0.14 -5.00 9.95 22.45 0.22 -4.78 16 24 C -0.02 -0.91 6.08 -21.34 -0.13 -1.04 16 25 H 0.06 1.47 5.68 -2.39 -0.01 1.46 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.01 8.14 -2.38 -0.02 1.00 16 28 H 0.07 1.86 7.74 -2.39 -0.02 1.84 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.47 5.74 -2.39 -0.01 1.45 16 32 H 0.33 9.35 8.27 -92.71 -0.77 8.58 16 33 H 0.12 5.47 7.54 -2.91 -0.02 5.45 16 34 H 0.14 5.33 7.54 -2.91 -0.02 5.31 16 35 H 0.16 4.56 7.80 -2.91 -0.02 4.54 16 Total: -1.00 -57.10 300.02 4.87 -52.23 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: 0.57 Total: 40.48 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.16 Total: -27.81 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -1.04 Total: -49.54 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: 0.13 Total: -38.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: 2.03 Total: 23.54 kcal Total: -57.10 4.87 -52.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587647258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.730 kcal (2) G-P(sol) polarization free energy of solvation -57.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds