Wall clock time and date at job start Mon Mar 30 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99853 * 2 1 4 4 C 1.50703 * 109.47256 * 269.99920 * 3 2 1 5 5 H 1.08008 * 119.99626 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00421 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00073 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47321 * 89.99983 * 8 6 4 10 10 H 1.48502 * 109.46975 * 210.00092 * 8 6 4 11 11 H 1.48500 * 109.47462 * 330.00065 * 8 6 4 12 12 C 1.38535 * 120.00223 * 180.02562 * 2 1 3 13 13 C 1.39667 * 120.53214 * 185.00342 * 12 2 1 14 14 C 1.38076 * 118.33192 * 179.97438 * 13 12 2 15 15 C 1.50704 * 120.39803 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47506 * 122.34923 * 15 14 13 17 17 C 1.52993 * 109.47562 * 65.58551 * 16 15 14 18 18 C 1.53009 * 109.46616 * 305.58518 * 16 15 14 19 19 C 1.53000 * 109.47149 * 185.59148 * 16 15 14 20 20 N 1.32576 * 119.20423 * 0.26509 * 14 13 12 21 21 C 1.31772 * 121.01062 * 359.44504 * 20 14 13 22 22 N 1.31784 * 121.82816 * 0.57356 * 21 20 14 23 23 H 1.09002 * 109.47424 * 269.99865 * 1 2 3 24 24 H 1.08996 * 109.47483 * 30.00024 * 1 2 3 25 25 H 1.09007 * 109.47181 * 150.00555 * 1 2 3 26 26 H 1.08994 * 109.47385 * 29.99836 * 3 2 1 27 27 H 1.09001 * 109.47587 * 150.00357 * 3 2 1 28 28 H 0.97005 * 119.99897 * 180.02562 * 7 6 4 29 29 H 1.08001 * 120.83301 * 359.97438 * 13 12 2 30 30 H 1.08994 * 109.46935 * 2.33943 * 15 14 13 31 31 H 1.09009 * 109.46355 * 242.34466 * 15 14 13 32 32 H 1.09003 * 109.47458 * 293.98941 * 17 16 15 33 33 H 1.09003 * 109.46971 * 53.98742 * 17 16 15 34 34 H 1.08997 * 109.47455 * 173.99003 * 17 16 15 35 35 H 1.08995 * 109.46475 * 180.02562 * 18 16 15 36 36 H 1.09002 * 109.46834 * 300.00312 * 18 16 15 37 37 H 1.08996 * 109.47085 * 60.00500 * 18 16 15 38 38 H 1.09002 * 109.46555 * 299.99255 * 19 16 15 39 39 H 1.09001 * 109.47272 * 59.99440 * 19 16 15 40 40 H 1.09000 * 109.47079 * 179.97438 * 19 16 15 41 41 H 1.07994 * 119.08585 * 180.26700 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5523 3.6186 -0.6733 8 14 3.4365 3.4175 -3.4340 9 1 2.3061 4.2601 -3.9003 10 1 4.6966 4.2009 -3.4967 11 1 3.5539 2.2206 -4.3051 12 6 2.1577 -1.1997 -0.0005 13 6 3.5503 -1.2150 0.1044 14 6 4.1945 -2.4363 0.0997 15 6 5.6957 -2.5070 0.2111 16 6 6.0777 -3.3546 1.4262 17 6 5.6328 -4.8008 1.1996 18 6 5.3876 -2.7981 2.6733 19 6 7.5947 -3.3122 1.6210 20 7 3.4768 -3.5457 -0.0086 21 6 2.1631 -3.4982 -0.1004 22 7 1.5073 -2.3552 -0.1002 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8901 -0.5138 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0284 4.4450 -0.8505 29 1 4.1093 -0.2946 0.1870 30 1 6.0991 -1.5013 0.3281 31 1 6.1059 -2.9603 -0.6915 32 1 4.5442 -4.8453 1.1674 33 1 6.0393 -5.1621 0.2549 34 1 5.9980 -5.4253 2.0149 35 1 5.6602 -3.4017 3.5390 36 1 5.7046 -1.7678 2.8347 37 1 4.3070 -2.8283 2.5345 38 1 8.0862 -3.7086 0.7325 39 1 7.9116 -2.2818 1.7825 40 1 7.8668 -3.9156 2.4870 41 1 1.6089 -4.4214 -0.1831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537960373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:57 Heat of formation + Delta-G solvation = 35.529591 kcal Electronic energy + Delta-G solvation = -20288.250323 eV Core-core repulsion = 17395.836125 eV Total energy + Delta-G solvation = -2892.414198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42362 -37.57594 -36.18725 -33.04659 -32.32843 -30.85569 -28.19744 -27.32038 -27.11682 -26.96824 -25.08476 -23.80693 -22.40322 -20.48508 -18.62286 -16.92685 -16.69492 -16.31974 -15.00385 -14.80122 -14.75222 -14.26918 -14.18062 -14.04517 -13.77108 -13.25721 -13.02666 -12.53612 -12.32210 -12.21303 -11.81895 -11.56125 -11.52558 -11.40570 -11.32604 -11.01970 -10.81226 -10.72544 -10.64757 -10.43772 -10.33871 -10.18099 -9.81178 -9.55987 -8.99264 -8.60594 -8.42212 -7.05089 -6.19326 -4.28975 1.74700 2.08345 3.20597 3.27718 3.31952 3.76348 4.30730 4.52267 4.61865 4.85096 4.99720 5.02694 5.11516 5.18911 5.46615 5.64927 5.71286 5.74380 5.86281 5.92933 5.95317 5.97857 6.05413 6.08410 6.09201 6.20722 6.23123 6.29031 6.37779 6.39744 6.44639 6.55214 6.73886 6.88480 7.10161 7.14004 7.48488 7.73423 8.00921 8.14680 8.20344 8.76499 8.96705 9.38554 10.85044 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.005919 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.697853 B = 4729.072877 C = 5566.340033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.578 5.578 3 C 0.248 3.752 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.445 3.555 13 C -0.274 4.274 14 C 0.195 3.805 15 C -0.059 4.059 16 C -0.058 4.058 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.141 4.141 20 N -0.573 5.573 21 C 0.323 3.677 22 N -0.598 5.598 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.266 0.734 29 H 0.145 0.855 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -11.612 4.366 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.287 5.287 3 C 0.129 3.871 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.201 3.799 13 C -0.303 4.303 14 C 0.056 3.944 15 C -0.097 4.097 16 C -0.058 4.058 17 C -0.199 4.199 18 C -0.196 4.196 19 C -0.198 4.198 20 N -0.295 5.295 21 C 0.033 3.967 22 N -0.325 5.325 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.330 -11.979 4.337 12.952 hybrid contribution 0.534 1.322 -0.979 1.730 sum 2.864 -10.658 3.358 11.535 Atomic orbital electron populations 1.21480 0.80197 1.02558 1.00159 1.47043 1.05660 1.03671 1.72279 1.19461 0.92228 0.77861 0.97595 1.21496 1.36994 1.06784 0.92232 0.92203 1.24935 0.95149 0.96112 0.97613 1.69921 1.38035 1.14268 1.30846 0.86486 0.77828 0.78750 0.84394 1.20456 1.20940 1.19815 1.18598 0.88578 0.86397 0.86330 1.22124 0.94502 1.00332 1.13302 1.21011 0.95980 0.87980 0.89474 1.20648 0.89318 1.01054 0.98721 1.20404 0.94860 0.96228 0.94347 1.22024 1.04322 0.93675 0.99868 1.21863 1.00554 1.00500 0.96685 1.21886 0.94951 1.01629 1.01351 1.68121 1.07929 1.31304 1.22114 1.24363 0.87705 0.94713 0.89951 1.67905 1.41592 0.98103 1.24862 0.94300 0.91436 0.91266 0.94313 0.94279 0.92457 0.83733 0.90219 0.90111 0.89407 0.93296 0.94356 0.93130 0.92748 0.92856 0.92741 0.92696 0.92830 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 10.51 59.84 0.63 2.46 16 2 N -0.58 -12.47 2.96 -182.93 -0.54 -13.02 16 3 C 0.25 6.03 5.03 -5.19 -0.03 6.01 16 4 C -0.54 -14.29 9.39 -34.44 -0.32 -14.62 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.45 9.31 7.39 -154.79 -1.14 8.17 16 13 C -0.27 -5.48 8.95 -39.11 -0.35 -5.83 16 14 C 0.20 3.38 4.63 -82.33 -0.38 3.00 16 15 C -0.06 -0.86 4.75 -27.88 -0.13 -0.99 16 16 C -0.06 -0.73 0.80 -154.51 -0.12 -0.85 16 17 C -0.14 -1.77 7.92 37.15 0.29 -1.48 16 18 C -0.14 -1.83 8.14 37.16 0.30 -1.53 16 19 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 20 N -0.57 -9.61 7.43 -10.88 -0.08 -9.69 16 21 C 0.32 5.38 12.28 -92.18 -1.13 4.25 16 22 N -0.60 -11.47 9.23 -13.81 -0.13 -11.59 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 25 H 0.07 1.22 7.33 -51.93 -0.38 0.84 16 26 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.04 0.99 6.05 -51.93 -0.31 0.68 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.14 3.06 6.10 -52.49 -0.32 2.74 16 30 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 31 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.09 1.24 5.71 -51.93 -0.30 0.94 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.81 7.06 -51.93 -0.37 0.44 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -28.18 331.26 -8.91 -37.09 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.70 Total: 1.34 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.17 Total: -0.95 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.01 Total: -58.33 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.18 -8.91 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.620 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds