Wall clock time and date at job start Mon Mar 30 2020 07:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 119.99853 * 2 1 4 4 C 1.50703 * 109.47256 * 269.99920 * 3 2 1 5 5 H 1.08008 * 119.99626 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00421 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00073 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47321 * 89.99983 * 8 6 4 10 10 H 1.48502 * 109.46975 * 210.00092 * 8 6 4 11 11 H 1.48500 * 109.47462 * 330.00065 * 8 6 4 12 12 C 1.38535 * 120.00223 * 180.02562 * 2 1 3 13 13 C 1.39667 * 120.53214 * 185.00342 * 12 2 1 14 14 C 1.38076 * 118.33192 * 179.97438 * 13 12 2 15 15 C 1.50704 * 120.39803 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47506 * 122.34923 * 15 14 13 17 17 C 1.52993 * 109.47562 * 65.58551 * 16 15 14 18 18 C 1.53009 * 109.46616 * 305.58518 * 16 15 14 19 19 C 1.53000 * 109.47149 * 185.59148 * 16 15 14 20 20 N 1.32576 * 119.20423 * 0.26509 * 14 13 12 21 21 C 1.31772 * 121.01062 * 359.44504 * 20 14 13 22 22 N 1.31784 * 121.82816 * 0.57356 * 21 20 14 23 23 H 1.09002 * 109.47424 * 269.99865 * 1 2 3 24 24 H 1.08996 * 109.47483 * 30.00024 * 1 2 3 25 25 H 1.09007 * 109.47181 * 150.00555 * 1 2 3 26 26 H 1.08994 * 109.47385 * 29.99836 * 3 2 1 27 27 H 1.09001 * 109.47587 * 150.00357 * 3 2 1 28 28 H 0.97005 * 119.99897 * 180.02562 * 7 6 4 29 29 H 1.08001 * 120.83301 * 359.97438 * 13 12 2 30 30 H 1.08994 * 109.46935 * 2.33943 * 15 14 13 31 31 H 1.09009 * 109.46355 * 242.34466 * 15 14 13 32 32 H 1.09003 * 109.47458 * 293.98941 * 17 16 15 33 33 H 1.09003 * 109.46971 * 53.98742 * 17 16 15 34 34 H 1.08997 * 109.47455 * 173.99003 * 17 16 15 35 35 H 1.08995 * 109.46475 * 180.02562 * 18 16 15 36 36 H 1.09002 * 109.46834 * 300.00312 * 18 16 15 37 37 H 1.08996 * 109.47085 * 60.00500 * 18 16 15 38 38 H 1.09002 * 109.46555 * 299.99255 * 19 16 15 39 39 H 1.09001 * 109.47272 * 59.99440 * 19 16 15 40 40 H 1.09000 * 109.47079 * 179.97438 * 19 16 15 41 41 H 1.07994 * 119.08585 * 180.26700 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5523 3.6186 -0.6733 8 14 3.4365 3.4175 -3.4340 9 1 2.3061 4.2601 -3.9003 10 1 4.6966 4.2009 -3.4967 11 1 3.5539 2.2206 -4.3051 12 6 2.1577 -1.1997 -0.0005 13 6 3.5503 -1.2150 0.1044 14 6 4.1945 -2.4363 0.0997 15 6 5.6957 -2.5070 0.2111 16 6 6.0777 -3.3546 1.4262 17 6 5.6328 -4.8008 1.1996 18 6 5.3876 -2.7981 2.6733 19 6 7.5947 -3.3122 1.6210 20 7 3.4768 -3.5457 -0.0086 21 6 2.1631 -3.4982 -0.1004 22 7 1.5073 -2.3552 -0.1002 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8901 -0.5138 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1385 0.5138 28 1 4.0284 4.4450 -0.8505 29 1 4.1093 -0.2946 0.1870 30 1 6.0991 -1.5013 0.3281 31 1 6.1059 -2.9603 -0.6915 32 1 4.5442 -4.8453 1.1674 33 1 6.0393 -5.1621 0.2549 34 1 5.9980 -5.4253 2.0149 35 1 5.6602 -3.4017 3.5390 36 1 5.7046 -1.7678 2.8347 37 1 4.3070 -2.8283 2.5345 38 1 8.0862 -3.7086 0.7325 39 1 7.9116 -2.2818 1.7825 40 1 7.8668 -3.9156 2.4870 41 1 1.6089 -4.4214 -0.1831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537960373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:56 Heat of formation + Delta-G solvation = 23.093636 kcal Electronic energy + Delta-G solvation = -20288.789586 eV Core-core repulsion = 17395.836125 eV Total energy + Delta-G solvation = -2892.953462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.86085 -38.80884 -37.70495 -34.93324 -33.85181 -32.34102 -29.96097 -28.74421 -28.11748 -27.93628 -26.65433 -25.48765 -23.98672 -22.00059 -19.74717 -18.71167 -18.41935 -17.85611 -16.63493 -16.29619 -16.23086 -15.72230 -15.48583 -15.32400 -15.05116 -14.75473 -14.48656 -14.01889 -13.68364 -13.43691 -13.28383 -13.14149 -12.82581 -12.71061 -12.64927 -12.54864 -12.43048 -12.21154 -12.03701 -11.80655 -11.65652 -11.45772 -11.39428 -11.19320 -10.67041 -10.46840 -9.85042 -8.74091 -8.19745 -6.42175 0.30878 0.57475 1.36519 1.37973 1.48221 2.14244 2.37740 3.02788 3.09404 3.33713 3.53725 3.81893 3.96256 4.01942 4.16606 4.43447 4.46961 4.56774 4.63938 4.67855 4.72797 4.80652 4.86033 4.89993 4.94735 4.99548 5.02284 5.07445 5.12968 5.15959 5.18659 5.32197 5.42805 5.51245 5.55335 5.61617 5.87305 5.91291 5.99139 6.51017 6.57811 6.74495 7.28483 7.49906 8.78979 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.005919 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.697853 B = 4729.072877 C = 5566.340033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.593 5.593 3 C 0.265 3.735 4 C -0.547 4.547 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.275 1.275 12 C 0.428 3.572 13 C -0.301 4.301 14 C 0.208 3.792 15 C -0.062 4.062 16 C -0.055 4.055 17 C -0.137 4.137 18 C -0.135 4.135 19 C -0.137 4.137 20 N -0.564 5.564 21 C 0.323 3.677 22 N -0.605 5.605 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.270 0.730 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.028 0.972 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -13.241 3.925 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.302 5.302 3 C 0.144 3.856 4 C -0.586 4.586 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.185 3.815 13 C -0.329 4.329 14 C 0.067 3.933 15 C -0.099 4.099 16 C -0.055 4.055 17 C -0.194 4.194 18 C -0.193 4.193 19 C -0.194 4.194 20 N -0.285 5.285 21 C 0.034 3.966 22 N -0.332 5.332 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.019 -13.638 3.901 14.503 hybrid contribution 0.324 1.714 -0.796 1.917 sum 3.342 -11.924 3.105 12.767 Atomic orbital electron populations 1.21553 0.78538 1.02705 1.01231 1.46933 1.06661 1.03103 1.73519 1.19011 0.91498 0.78909 0.96152 1.21644 1.37201 1.06932 0.92827 0.93533 1.25676 0.94789 0.96076 1.01382 1.70008 1.38521 1.14672 1.32692 0.85526 0.78100 0.78207 0.79682 1.19577 1.20112 1.20034 1.18791 0.88996 0.86769 0.86943 1.22083 0.94454 1.00623 1.15776 1.21420 0.97434 0.87146 0.87315 1.20782 0.87252 1.01629 1.00284 1.20411 0.96340 0.95899 0.92850 1.21957 1.03173 0.93578 1.00721 1.21836 0.98916 1.00667 0.97861 1.21846 0.93052 1.02058 1.02443 1.68298 1.08048 1.30533 1.21632 1.25252 0.88008 0.95302 0.88064 1.67961 1.41825 0.98092 1.25299 0.92731 0.91725 0.90561 0.95837 0.95955 0.92124 0.85900 0.90534 0.88986 0.91073 0.92930 0.92817 0.91394 0.93320 0.95331 0.91794 0.92737 0.91460 0.76162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.77 10.51 127.77 1.34 5.12 16 2 N -0.59 -26.24 2.96 -732.66 -2.17 -28.41 16 3 C 0.27 13.44 5.03 85.63 0.43 13.87 16 4 C -0.55 -29.91 9.39 25.60 0.24 -29.67 16 5 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 6 C 0.02 1.15 5.46 84.65 0.46 1.61 16 7 N -0.92 -51.85 13.29 21.45 0.28 -51.57 16 8 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.43 18.18 7.39 133.18 0.98 19.17 16 13 C -0.30 -12.38 8.95 22.58 0.20 -12.18 16 14 C 0.21 7.14 4.63 42.41 0.20 7.33 16 15 C -0.06 -1.72 4.75 29.85 0.14 -1.58 16 16 C -0.05 -1.28 0.80 -52.18 -0.04 -1.32 16 17 C -0.14 -3.08 7.92 71.98 0.57 -2.51 16 18 C -0.14 -3.44 8.14 71.99 0.59 -2.85 16 19 C -0.14 -2.57 8.47 71.98 0.61 -1.96 16 20 N -0.56 -18.12 7.43 -188.34 -1.40 -19.52 16 21 C 0.32 10.19 12.28 180.89 2.22 12.41 16 22 N -0.61 -22.77 9.23 -197.60 -1.82 -24.60 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 25 H 0.08 2.67 7.33 -2.38 -0.02 2.65 16 26 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 27 H 0.02 1.20 6.05 -2.39 -0.01 1.19 16 28 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 29 H 0.12 5.54 6.10 -2.91 -0.02 5.52 16 30 H 0.08 2.18 7.92 -2.39 -0.02 2.16 16 31 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.07 1.85 5.71 -2.39 -0.01 1.84 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.03 0.85 7.06 -2.39 -0.02 0.83 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.22 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -60.41 331.26 5.86 -54.55 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.99 Total: 17.12 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 7.95 Total: 7.45 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -5.11 Total: -124.09 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -60.41 5.86 -54.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537960373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.644 kcal (2) G-P(sol) polarization free energy of solvation -60.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds