Wall clock time and date at job start Mon Mar 30 2020 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46817 * 2 1 4 4 C 1.50695 * 109.47780 * 120.00287 * 2 1 3 5 5 O 1.21368 * 119.99873 * 267.42192 * 4 2 1 6 6 C 1.46217 * 119.99959 * 87.41823 * 4 2 1 7 7 C 1.41077 * 120.08708 * 265.02582 * 6 4 2 8 8 O 1.35443 * 119.84115 * 359.97438 * 7 6 4 9 9 C 1.38639 * 120.32491 * 179.97438 * 7 6 4 10 10 C 1.38255 * 120.51791 * 0.26067 * 9 7 6 11 11 O 1.35504 * 119.91198 * 179.71780 * 10 9 7 12 12 C 1.41458 * 120.17320 * 359.44924 * 10 9 7 13 13 C 1.40958 * 120.16665 * 180.27479 * 12 10 9 14 14 H 1.07999 * 120.00323 * 319.67409 * 13 12 10 15 15 C 1.39823 * 119.99865 * 139.67839 * 13 12 10 16 16 N 1.30989 * 120.00163 * 340.82225 * 15 13 12 17 17 Si 1.86806 * 120.00153 * 160.82573 * 15 13 12 18 18 H 1.48497 * 109.47405 * 89.99693 * 17 15 13 19 19 H 1.48498 * 109.47320 * 209.99593 * 17 15 13 20 20 H 1.48500 * 109.46768 * 329.99754 * 17 15 13 21 21 C 1.40169 * 120.09349 * 85.00855 * 6 4 2 22 22 O 1.35364 * 120.25310 * 0.02562 * 21 6 4 23 23 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47107 * 299.99503 * 1 2 3 25 25 H 1.08995 * 109.47707 * 60.00055 * 1 2 3 26 26 H 1.09005 * 109.47107 * 240.00497 * 2 1 3 27 27 H 1.09005 * 109.47475 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47416 * 300.00240 * 3 2 1 29 29 H 1.08992 * 109.47442 * 60.00521 * 3 2 1 30 30 H 0.96705 * 113.99994 * 270.01917 * 8 7 6 31 31 H 1.07996 * 119.74185 * 179.97438 * 9 7 6 32 32 H 0.96701 * 113.99778 * 94.77195 * 11 10 9 33 33 H 0.97003 * 120.00161 * 179.97438 * 16 15 13 34 34 H 0.96698 * 114.00193 * 89.99996 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.2794 -0.0793 2.2372 6 6 2.2224 -2.1601 1.2111 7 6 1.2018 -3.0134 1.6806 8 8 0.0456 -2.4866 2.1497 9 6 1.3765 -4.3886 1.6642 10 6 2.5531 -4.9413 1.1934 11 8 2.7130 -6.2869 1.1882 12 6 3.5882 -4.1060 0.7118 13 6 4.7854 -4.6699 0.2265 14 1 5.2303 -5.5127 0.7346 15 6 5.3972 -4.1381 -0.9128 16 7 4.7069 -3.3918 -1.7389 17 14 7.1988 -4.4920 -1.2570 18 1 7.3134 -5.7259 -2.0752 19 1 7.7950 -3.3506 -1.9966 20 1 7.9202 -4.6808 0.0272 21 6 3.4189 -2.7057 0.7259 22 8 4.4041 -1.8951 0.2735 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4427 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 0.0551 -2.2992 3.0984 31 1 0.5892 -5.0331 2.0262 32 1 2.4847 -6.7068 0.3476 33 1 5.1314 -3.0225 -2.5291 34 1 5.0354 -1.6254 0.9545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772583061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:41 Heat of formation + Delta-G solvation = -153.256138 kcal Electronic energy + Delta-G solvation = -20925.604715 eV Core-core repulsion = 17596.015072 eV Total energy + Delta-G solvation = -3329.589643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67748 -38.14086 -36.87107 -36.44212 -33.98471 -33.65950 -33.13874 -29.43280 -28.79931 -26.82299 -24.90835 -23.84897 -21.45147 -21.10955 -18.77767 -18.27405 -17.47649 -16.37560 -16.10669 -15.90022 -15.51101 -15.03766 -14.61926 -14.15998 -13.93112 -13.48698 -13.25589 -13.02405 -12.74245 -12.41781 -12.18019 -11.99484 -11.79776 -11.54054 -11.28100 -11.03070 -10.76333 -10.60103 -10.57289 -10.30484 -10.08339 -9.66755 -9.35359 -9.03728 -8.81782 -7.50109 -7.34339 -6.86634 -4.49654 2.12113 2.43170 2.54625 3.00244 3.04821 3.09621 3.88548 4.20553 4.68877 4.90549 5.04265 5.23656 5.41248 5.56700 5.63013 5.74337 5.88273 6.04133 6.08927 6.15427 6.19192 6.33477 6.51959 6.56877 6.64920 6.90327 7.00890 7.12252 7.25960 7.45801 7.62855 8.05635 8.14385 8.40086 8.47471 8.68770 8.81135 9.03071 10.11715 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.008466 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.774927 B = 3306.558073 C = 4359.158102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C -0.136 4.136 4 C 0.444 3.556 5 O -0.473 6.473 6 C -0.187 4.187 7 C 0.026 3.974 8 O -0.495 6.495 9 C -0.135 4.135 10 C 0.022 3.978 11 O -0.491 6.491 12 C 0.073 3.927 13 C -0.460 4.460 14 H 0.086 0.914 15 C 0.088 3.912 16 N -0.754 5.754 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.261 1.261 21 C 0.100 3.900 22 O -0.465 6.465 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.364 0.636 31 H 0.109 0.891 32 H 0.366 0.634 33 H 0.283 0.717 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.100 3.300 0.500 4.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C -0.193 4.193 4 C 0.321 3.679 5 O -0.348 6.348 6 C -0.189 4.189 7 C -0.019 4.019 8 O -0.303 6.303 9 C -0.155 4.155 10 C -0.024 4.024 11 O -0.299 6.299 12 C 0.070 3.930 13 C -0.488 4.488 14 H 0.104 0.896 15 C -0.135 4.135 16 N -0.377 5.377 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 C 0.054 3.946 22 O -0.271 6.271 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.217 0.783 31 H 0.128 0.872 32 H 0.220 0.780 33 H 0.093 0.907 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.251 3.749 0.233 4.968 hybrid contribution 1.059 -0.223 0.010 1.083 sum -2.192 3.527 0.243 4.159 Atomic orbital electron populations 1.21605 0.92661 1.03145 1.01501 1.21600 0.97736 0.97204 0.99077 1.21669 1.01262 0.94755 1.01623 1.22130 0.69802 0.88389 0.87547 1.90456 1.39999 1.69563 1.34782 1.20657 0.96861 0.93847 1.07550 1.17213 0.86906 0.89280 1.08536 1.84748 1.33857 1.84215 1.27471 1.20920 0.96642 0.93770 1.04138 1.18147 0.92081 0.82731 1.09406 1.84670 1.89839 1.17296 1.38116 1.18088 0.93369 0.90263 0.91293 1.19186 1.05601 1.14842 1.09207 0.89604 1.25758 0.99424 0.93074 0.95235 1.69757 1.37482 1.22205 1.08236 0.86378 0.82660 0.78675 0.79404 1.19656 1.20102 1.18544 1.18113 0.87431 0.88676 1.00409 1.84809 1.39463 1.66525 1.36287 0.91179 0.92779 0.92242 0.88232 0.92555 0.92441 0.92278 0.78331 0.87248 0.78028 0.90658 0.78869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.18 37.16 0.34 -1.71 16 2 C -0.14 -2.43 3.16 -91.78 -0.29 -2.72 16 3 C -0.14 -2.10 8.76 37.16 0.33 -1.77 16 4 C 0.44 9.17 4.67 -31.11 -0.15 9.03 16 5 O -0.47 -10.35 16.89 5.48 0.09 -10.25 16 6 C -0.19 -4.20 5.55 -104.89 -0.58 -4.78 16 7 C 0.03 0.56 6.73 -38.36 -0.26 0.30 16 8 O -0.50 -9.30 12.54 -18.02 -0.23 -9.52 16 9 C -0.14 -2.94 9.86 -39.43 -0.39 -3.33 16 10 C 0.02 0.52 6.72 -38.35 -0.26 0.26 16 11 O -0.49 -10.53 12.91 -18.21 -0.24 -10.76 16 12 C 0.07 1.83 5.35 -106.57 -0.57 1.26 16 13 C -0.46 -11.47 8.36 -37.96 -0.32 -11.79 16 14 H 0.09 2.14 7.91 -52.49 -0.42 1.72 16 15 C 0.09 2.08 4.42 -17.32 -0.08 2.00 16 16 N -0.75 -18.62 11.34 55.54 0.63 -17.99 16 17 Si 0.90 18.00 29.60 -169.99 -5.03 12.97 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 21 C 0.10 2.40 6.19 -37.79 -0.23 2.17 16 22 O -0.46 -10.63 9.95 -17.78 -0.18 -10.80 16 23 H 0.07 1.19 7.76 -51.93 -0.40 0.78 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.89 8.12 -51.93 -0.42 1.47 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 30 H 0.36 5.50 9.06 45.56 0.41 5.91 16 31 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.37 6.45 9.06 45.56 0.41 6.86 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.36 7.01 9.06 45.56 0.41 7.42 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -29.12 301.27 -4.52 -33.64 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -1.66 Total: 19.27 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.45 Total: -11.08 kcal Atomic # 7 Polarization: -18.62 SS G_CDS: 0.63 Total: -17.99 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.55 Total: -41.34 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.12 -4.52 -33.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772583061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.620 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds