Wall clock time and date at job start Mon Mar 30 2020 07:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46817 * 2 1 4 4 C 1.50695 * 109.47780 * 120.00287 * 2 1 3 5 5 O 1.21368 * 119.99873 * 267.42192 * 4 2 1 6 6 C 1.46217 * 119.99959 * 87.41823 * 4 2 1 7 7 C 1.41077 * 120.08708 * 265.02582 * 6 4 2 8 8 O 1.35443 * 119.84115 * 359.97438 * 7 6 4 9 9 C 1.38639 * 120.32491 * 179.97438 * 7 6 4 10 10 C 1.38255 * 120.51791 * 0.26067 * 9 7 6 11 11 O 1.35504 * 119.91198 * 179.71780 * 10 9 7 12 12 C 1.41458 * 120.17320 * 359.44924 * 10 9 7 13 13 C 1.40958 * 120.16665 * 180.27479 * 12 10 9 14 14 H 1.07999 * 120.00323 * 319.67409 * 13 12 10 15 15 C 1.39823 * 119.99865 * 139.67839 * 13 12 10 16 16 N 1.30989 * 120.00163 * 340.82225 * 15 13 12 17 17 Si 1.86806 * 120.00153 * 160.82573 * 15 13 12 18 18 H 1.48497 * 109.47405 * 89.99693 * 17 15 13 19 19 H 1.48498 * 109.47320 * 209.99593 * 17 15 13 20 20 H 1.48500 * 109.46768 * 329.99754 * 17 15 13 21 21 C 1.40169 * 120.09349 * 85.00855 * 6 4 2 22 22 O 1.35364 * 120.25310 * 0.02562 * 21 6 4 23 23 H 1.09000 * 109.46744 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47107 * 299.99503 * 1 2 3 25 25 H 1.08995 * 109.47707 * 60.00055 * 1 2 3 26 26 H 1.09005 * 109.47107 * 240.00497 * 2 1 3 27 27 H 1.09005 * 109.47475 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47416 * 300.00240 * 3 2 1 29 29 H 1.08992 * 109.47442 * 60.00521 * 3 2 1 30 30 H 0.96705 * 113.99994 * 270.01917 * 8 7 6 31 31 H 1.07996 * 119.74185 * 179.97438 * 9 7 6 32 32 H 0.96701 * 113.99778 * 94.77195 * 11 10 9 33 33 H 0.97003 * 120.00161 * 179.97438 * 16 15 13 34 34 H 0.96698 * 114.00193 * 89.99996 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.2794 -0.0793 2.2372 6 6 2.2224 -2.1601 1.2111 7 6 1.2018 -3.0134 1.6806 8 8 0.0456 -2.4866 2.1497 9 6 1.3765 -4.3886 1.6642 10 6 2.5531 -4.9413 1.1934 11 8 2.7130 -6.2869 1.1882 12 6 3.5882 -4.1060 0.7118 13 6 4.7854 -4.6699 0.2265 14 1 5.2303 -5.5127 0.7346 15 6 5.3972 -4.1381 -0.9128 16 7 4.7069 -3.3918 -1.7389 17 14 7.1988 -4.4920 -1.2570 18 1 7.3134 -5.7259 -2.0752 19 1 7.7950 -3.3506 -1.9966 20 1 7.9202 -4.6808 0.0272 21 6 3.4189 -2.7057 0.7259 22 8 4.4041 -1.8951 0.2735 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4427 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 0.0551 -2.2992 3.0984 31 1 0.5892 -5.0331 2.0262 32 1 2.4847 -6.7068 0.3476 33 1 5.1314 -3.0225 -2.5291 34 1 5.0354 -1.6254 0.9545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772583061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:40 Heat of formation + Delta-G solvation = -176.031673 kcal Electronic energy + Delta-G solvation = -20926.592336 eV Core-core repulsion = 17596.015072 eV Total energy + Delta-G solvation = -3330.577264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34560 -39.82507 -38.52532 -38.17212 -35.43032 -35.38808 -34.85438 -31.18607 -30.52888 -28.06018 -26.69268 -25.42675 -23.18743 -22.73523 -20.37554 -19.97239 -19.21840 -18.01744 -17.83805 -17.61127 -17.16933 -16.72101 -16.20754 -15.73612 -15.45078 -15.17826 -14.84706 -14.71831 -14.37273 -14.02563 -13.56391 -13.32060 -13.23372 -12.98818 -12.89529 -12.84167 -12.16699 -12.07517 -12.06137 -11.89457 -11.72857 -11.38320 -11.07251 -10.79989 -10.45600 -9.25228 -9.13534 -8.62333 -6.34532 0.36730 0.68458 0.91777 1.41183 1.44046 1.53733 2.23347 2.48950 3.12430 3.19522 3.32562 3.87181 3.91056 4.04337 4.09288 4.22824 4.45753 4.64770 4.74068 4.84031 4.88007 4.92197 5.06938 5.16222 5.22605 5.24351 5.32343 5.41700 5.50754 5.79091 5.84739 6.32446 6.43937 6.61039 6.88573 6.95369 7.15028 7.30679 8.37819 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.008466 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.774927 B = 3306.558073 C = 4359.158102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C -0.130 4.130 4 C 0.444 3.556 5 O -0.489 6.489 6 C -0.204 4.204 7 C 0.040 3.960 8 O -0.492 6.492 9 C -0.143 4.143 10 C 0.016 3.984 11 O -0.496 6.496 12 C 0.043 3.957 13 C -0.490 4.490 14 H 0.075 0.925 15 C 0.058 3.942 16 N -0.788 5.788 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.264 1.264 21 C 0.088 3.912 22 O -0.472 6.472 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.387 0.613 31 H 0.132 0.868 32 H 0.383 0.617 33 H 0.286 0.714 34 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 4.040 0.378 5.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.155 4.155 3 C -0.187 4.187 4 C 0.323 3.677 5 O -0.365 6.365 6 C -0.206 4.206 7 C -0.005 4.005 8 O -0.302 6.302 9 C -0.162 4.162 10 C -0.030 4.030 11 O -0.306 6.306 12 C 0.039 3.961 13 C -0.519 4.519 14 H 0.093 0.907 15 C -0.161 4.161 16 N -0.411 5.411 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.188 1.188 21 C 0.041 3.959 22 O -0.279 6.279 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.150 0.850 32 H 0.239 0.761 33 H 0.097 0.903 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.970 4.482 0.125 5.989 hybrid contribution 1.118 -0.464 0.143 1.219 sum -2.852 4.018 0.268 4.935 Atomic orbital electron populations 1.21585 0.90674 1.02613 1.03331 1.21619 0.99276 0.98030 0.96561 1.21655 1.00599 0.93303 1.03190 1.22400 0.69260 0.87666 0.88394 1.90443 1.40898 1.69545 1.35650 1.20965 0.96743 0.95375 1.07500 1.17334 0.86912 0.89291 1.07003 1.84675 1.32344 1.83912 1.29294 1.21126 0.96741 0.94246 1.04052 1.18382 0.92361 0.83294 1.08989 1.84593 1.90012 1.16603 1.39408 1.18436 0.94157 0.91135 0.92350 1.19218 1.06707 1.15612 1.10326 0.90731 1.26362 1.02750 0.92565 0.94435 1.69802 1.38926 1.23573 1.08820 0.85402 0.77864 0.78643 0.78971 1.19085 1.19551 1.18782 1.18257 0.88173 0.88657 1.00777 1.84760 1.39748 1.66376 1.37046 0.92835 0.92075 0.89302 0.89850 0.93629 0.89511 0.92023 0.75798 0.85020 0.76089 0.90310 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 9.18 71.98 0.66 -2.91 16 2 C -0.14 -4.62 3.16 -11.54 -0.04 -4.66 16 3 C -0.13 -3.75 8.76 71.98 0.63 -3.12 16 4 C 0.44 18.00 4.67 27.76 0.13 18.13 16 5 O -0.49 -20.94 16.89 -3.30 -0.06 -20.99 16 6 C -0.20 -9.09 5.55 -20.04 -0.11 -9.20 16 7 C 0.04 1.69 6.73 23.06 0.16 1.84 16 8 O -0.49 -17.38 12.54 -87.39 -1.10 -18.47 16 9 C -0.14 -6.04 9.86 22.37 0.22 -5.82 16 10 C 0.02 0.74 6.72 23.07 0.16 0.89 16 11 O -0.50 -21.16 12.91 -88.06 -1.14 -22.30 16 12 C 0.04 2.16 5.35 -21.13 -0.11 2.04 16 13 C -0.49 -24.96 8.36 23.32 0.19 -24.77 16 14 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 15 C 0.06 2.79 4.42 85.20 0.38 3.17 16 16 N -0.79 -39.37 11.34 21.81 0.25 -39.12 16 17 Si 0.97 37.17 29.60 68.60 2.03 39.20 16 18 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 C 0.09 4.27 6.19 23.43 0.15 4.41 16 22 O -0.47 -21.97 9.95 -86.54 -0.86 -22.83 16 23 H 0.05 1.70 7.76 -2.39 -0.02 1.69 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 3.12 8.12 -2.38 -0.02 3.10 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.74 7.86 -2.39 -0.02 1.72 16 30 H 0.39 10.63 9.06 -74.05 -0.67 9.96 16 31 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.38 13.40 9.06 -74.06 -0.67 12.73 16 33 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 34 H 0.37 14.79 9.06 -74.06 -0.67 14.12 16 Total: -1.00 -61.68 301.27 0.69 -60.99 By element: Atomic # 1 Polarization: 44.36 SS G_CDS: -0.84 Total: 43.51 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 2.41 Total: -19.99 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.25 Total: -39.12 kcal Atomic # 8 Polarization: -81.44 SS G_CDS: -3.15 Total: -84.59 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -61.68 0.69 -60.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772583061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.044 kcal (2) G-P(sol) polarization free energy of solvation -61.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds