Wall clock time and date at job start Mon Mar 30 2020 16:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 N 1.39803 * 119.99857 * 359.71466 * 7 2 1 10 10 C 1.46857 * 109.35722 * 300.41463 * 9 7 2 11 11 C 1.53102 * 109.48011 * 179.73073 * 10 9 7 12 12 N 1.47351 * 108.79534 * 0.07716 * 11 10 9 13 13 C 1.47318 * 109.93473 * 60.46161 * 12 11 10 14 14 C 1.46855 * 109.35621 * 180.27844 * 9 7 2 15 15 C 1.47353 * 109.83554 * 299.37407 * 12 11 10 16 16 C 1.46863 * 109.34765 * 60.14816 * 9 7 2 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.46709 * 299.73404 * 10 9 7 19 19 H 1.08999 * 109.47189 * 59.72120 * 10 9 7 20 20 H 1.09007 * 109.58134 * 240.28865 * 11 10 9 21 21 H 1.08999 * 109.70062 * 119.94259 * 11 10 9 22 22 H 1.09005 * 109.58081 * 179.68315 * 13 12 11 23 23 H 1.09005 * 109.68229 * 59.35870 * 13 12 11 24 24 H 1.08998 * 109.47475 * 300.21672 * 14 9 7 25 25 H 1.09003 * 109.47275 * 60.22328 * 14 9 7 26 26 H 1.09006 * 109.58201 * 180.42660 * 15 12 11 27 27 H 1.09000 * 109.58492 * 300.70117 * 15 12 11 28 28 H 1.08998 * 109.46810 * 300.27044 * 16 9 7 29 29 H 1.08995 * 109.47220 * 60.27404 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 7 1.3057 -2.4047 0.0050 10 6 0.4600 -2.4731 1.2036 11 6 -0.3119 -3.7953 1.2091 12 7 0.0534 -4.5633 0.0057 13 6 1.4991 -4.8463 0.0102 14 6 2.2623 -3.5189 0.0098 15 6 -0.3054 -3.8000 -1.2026 16 6 0.4599 -2.4837 -1.1931 17 1 -0.4850 0.8400 0.0004 18 1 1.0862 -2.4144 2.0939 19 1 -0.2443 -1.6412 1.1994 20 1 -1.3831 -3.5930 1.2021 21 1 -0.0540 -4.3677 2.1001 22 1 1.7620 -5.4191 -0.8792 23 1 1.7588 -5.4167 0.9020 24 1 2.8913 -3.4617 -0.8785 25 1 2.8863 -3.4582 0.9015 26 1 -0.0404 -4.3749 -2.0899 27 1 -1.3768 -3.5998 -1.2035 28 1 -0.2444 -1.6518 -1.1961 29 1 1.0860 -2.4330 -2.0838 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000143221.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:43:51 Heat of formation + Delta-G solvation = 104.103746 kcal Electronic energy + Delta-G solvation = -12330.165859 eV Core-core repulsion = 10371.098188 eV Total energy + Delta-G solvation = -1959.067671 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 183.119 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.96076 -37.52771 -34.35083 -32.66600 -32.59811 -28.23005 -25.51982 -25.19785 -24.98469 -20.88396 -19.57382 -18.78444 -18.54384 -17.26553 -16.14012 -15.13689 -15.07369 -14.61852 -14.61505 -14.53898 -14.36618 -14.06719 -13.85585 -13.40125 -12.67685 -12.65046 -12.17634 -11.95795 -11.91839 -11.85158 -10.83591 -9.90696 -8.72060 -7.17510 1.18747 1.61444 1.79729 1.81869 2.35818 2.58648 2.62166 3.07499 3.15209 3.27089 3.45455 3.58301 3.84180 3.92239 3.99309 4.06398 4.27689 4.28969 4.48864 4.56795 4.65163 4.78563 4.90106 4.91882 5.08741 5.48233 5.50931 5.54381 6.08730 6.76597 8.22028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.076 3.924 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.482 4.482 8 H 0.134 0.866 9 N -0.104 5.104 10 C -0.043 4.043 11 C 0.027 3.973 12 N -0.516 5.516 13 C 0.028 3.972 14 C -0.028 4.028 15 C 0.027 3.973 16 C -0.043 4.043 17 H 0.305 0.695 18 H 0.100 0.900 19 H 0.150 0.850 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -5.543 0.023 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.137 4.137 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.605 4.605 8 H 0.151 0.849 9 N 0.243 4.757 10 C -0.166 4.166 11 C -0.102 4.102 12 N -0.236 5.236 13 C -0.101 4.101 14 C -0.152 4.152 15 C -0.102 4.102 16 C -0.166 4.166 17 H 0.117 0.883 18 H 0.118 0.882 19 H 0.168 0.832 20 H 0.115 0.885 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.167 0.833 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.546 -5.920 0.022 5.945 hybrid contribution 0.776 1.559 0.001 1.741 sum 1.322 -4.361 0.023 4.557 Atomic orbital electron populations 1.69365 1.06382 1.32225 1.40223 1.25407 0.96068 1.01867 0.90361 0.85439 0.79347 0.76962 0.80754 1.18215 1.19106 1.18229 1.21230 0.94520 0.80714 1.63987 0.84880 1.41832 1.11225 1.11790 1.10850 1.24373 0.99456 1.03418 0.89394 1.22919 1.01775 0.91443 0.94043 1.63684 1.14882 1.42569 1.02506 1.22876 0.86715 0.94725 1.05740 1.24037 0.94529 0.88924 1.07759 1.22773 1.01887 0.91532 0.93979 1.24184 0.99545 1.03408 0.89474 0.88345 0.88204 0.83242 0.88485 0.88829 0.88291 0.88271 0.86979 0.86980 0.88815 0.88489 0.83263 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -3.64 8.88 55.43 0.49 -3.15 15 2 C 0.08 0.27 4.97 -17.82 -0.09 0.19 15 3 Si 0.95 3.37 29.54 -169.99 -5.02 -1.65 15 4 H -0.26 -1.09 7.11 56.52 0.40 -0.69 15 5 H -0.27 -1.29 7.11 56.52 0.40 -0.89 15 6 H -0.26 -1.09 7.11 56.52 0.40 -0.69 15 7 C -0.48 -0.83 7.48 -14.04 -0.10 -0.94 15 8 H 0.13 0.18 7.59 -52.49 -0.40 -0.22 15 9 N -0.10 0.13 0.02 -300.10 0.00 0.13 15 10 C -0.04 0.05 4.39 -3.79 -0.02 0.04 15 11 C 0.03 -0.07 6.13 -3.52 -0.02 -0.10 15 12 N -0.52 1.37 5.49 -233.82 -1.28 0.09 15 13 C 0.03 -0.13 6.13 -3.54 -0.02 -0.15 15 14 C -0.03 0.11 4.49 -3.79 -0.02 0.09 15 15 C 0.03 -0.07 6.11 -3.95 -0.02 -0.10 15 16 C -0.04 0.05 4.33 -4.22 -0.02 0.03 15 17 H 0.30 1.45 8.31 -40.82 -0.34 1.11 15 18 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 15 19 H 0.15 0.19 5.62 -51.93 -0.29 -0.10 15 20 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 15 21 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 15 22 H 0.10 -0.51 8.14 -51.93 -0.42 -0.93 15 23 H 0.10 -0.51 8.14 -51.93 -0.42 -0.94 15 24 H 0.11 -0.52 8.14 -51.93 -0.42 -0.94 15 25 H 0.11 -0.52 8.14 -51.93 -0.42 -0.94 15 26 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 15 27 H 0.10 -0.24 8.14 -51.93 -0.42 -0.66 15 28 H 0.15 0.19 5.64 -51.93 -0.29 -0.10 15 29 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 15 LS Contribution 217.83 15.07 3.28 3.28 Total: 0.00 -4.41 217.83 -7.19 -11.61 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: -4.34 Total: -9.38 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.31 Total: -0.93 kcal Atomic # 7 Polarization: -2.13 SS G_CDS: -0.80 Total: -2.93 kcal Atomic # 14 Polarization: 3.37 SS G_CDS: -5.02 Total: -1.65 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -4.41 -7.19 -11.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000143221.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.711 kcal (2) G-P(sol) polarization free energy of solvation -4.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds