Wall clock time and date at job start Mon Mar 30 2020 16:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47074 * 269.99439 * 3 2 1 5 5 H 1.48497 * 109.47145 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.99752 * 3 2 1 7 7 C 1.39005 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.37571 * 119.99894 * 0.02562 * 7 2 1 10 10 C 1.36665 * 126.88629 * 179.97438 * 9 7 2 11 11 C 1.34950 * 106.72919 * 180.02562 * 10 9 7 12 12 N 1.33455 * 109.02455 * 0.02562 * 11 10 9 13 13 N 1.28764 * 109.98617 * 359.97438 * 12 11 10 14 14 H 0.97000 * 119.99880 * 0.02562 * 1 2 3 15 15 H 1.08008 * 126.63647 * 359.97438 * 10 9 7 16 16 H 1.07997 * 125.48495 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 2.4940 2.0464 -1.4000 5 1 1.4439 2.6527 0.7000 6 1 3.5440 1.4402 0.7001 7 6 2.0076 -1.2038 0.0005 8 1 3.0876 -1.2038 0.0010 9 7 1.3197 -2.3952 0.0005 10 6 1.8562 -3.6521 0.0005 11 6 0.8201 -4.5168 0.0000 12 7 -0.3222 -3.8268 -0.0010 13 7 -0.0733 -2.5635 -0.0004 14 1 -0.4850 0.8401 -0.0004 15 1 2.9064 -3.9047 0.0002 16 1 0.9022 -5.5936 0.0002 RHF calculation, no. of doubly occupied orbitals= 24 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080300310.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:43:18 Heat of formation + Delta-G solvation = 87.482896 kcal Electronic energy + Delta-G solvation = -6618.891200 eV Core-core repulsion = 5101.256959 eV Total energy + Delta-G solvation = -1517.634242 eV No. of doubly occupied orbitals = 24 Molecular weight (most abundant/longest-lived isotopes) = 139.044 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.88876 -34.03357 -31.23720 -28.59253 -25.59764 -21.14369 -20.15934 -17.84370 -15.51076 -14.56586 -13.68630 -13.10495 -12.85230 -11.83951 -11.39173 -11.34338 -10.59400 -9.95973 -9.55884 -9.22258 -8.66347 -7.45708 -6.78014 -4.59157 2.85809 2.97404 3.03609 3.39158 3.72180 4.28743 4.74237 4.85304 6.29594 6.39232 6.82252 6.91750 7.12607 7.85294 7.95982 8.55846 9.17952 10.19335 10.27303 Molecular weight = 139.04amu Principal moments of inertia in cm(-1) A = 0.160675 B = 0.023968 C = 0.021011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 174.223266 B = 1167.940682 C = 1332.322891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.317 4.317 8 H 0.120 0.880 9 N -0.151 5.151 10 C -0.124 4.124 11 C -0.104 4.104 12 N -0.339 5.339 13 N -0.097 5.097 14 H 0.282 0.718 15 H 0.156 0.844 16 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 1.667 0.004 5.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.454 4.454 8 H 0.138 0.862 9 N 0.077 4.923 10 C -0.278 4.278 11 C -0.271 4.271 12 N -0.198 5.198 13 N -0.074 5.074 14 H 0.093 0.907 15 H 0.173 0.827 16 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.786 2.472 0.008 4.522 hybrid contribution 1.605 0.221 -0.005 1.621 sum 5.392 2.693 0.003 6.027 Atomic orbital electron populations 1.70153 1.06446 1.29004 1.33233 1.25791 0.95795 1.00840 0.94905 0.85689 0.79399 0.79087 0.79231 1.19270 1.19782 1.18522 1.20148 0.92201 0.80695 1.52327 0.86206 1.46825 1.06903 1.04630 1.33974 1.22638 0.99439 0.85448 1.20293 1.22340 0.88912 0.99279 1.16545 1.74067 1.25941 1.01085 1.18685 1.82509 0.88779 1.07227 1.28926 0.90733 0.82708 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.19 11.89 55.49 0.66 -20.53 13 2 C 0.05 1.18 5.50 -17.52 -0.10 1.08 13 3 Si 0.94 18.43 29.55 -169.99 -5.02 13.41 13 4 H -0.27 -5.13 7.11 56.52 0.40 -4.72 13 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 13 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 13 7 C -0.32 -8.44 10.31 -14.69 -0.15 -8.59 13 8 H 0.12 2.81 7.83 -52.48 -0.41 2.39 13 9 N -0.15 -4.31 3.78 -11.47 -0.04 -4.35 13 10 C -0.12 -3.09 11.58 -16.57 -0.19 -3.28 13 11 C -0.10 -2.60 11.86 -18.01 -0.21 -2.81 13 12 N -0.34 -9.78 12.33 30.10 0.37 -9.41 13 13 N -0.10 -2.99 11.73 60.35 0.71 -2.28 13 14 H 0.28 7.05 8.31 -40.82 -0.34 6.71 13 15 H 0.16 3.14 8.06 -52.48 -0.42 2.72 13 16 H 0.15 3.02 8.06 -52.49 -0.42 2.59 13 LS Contribution 162.09 15.07 2.44 2.44 Total: -1.00 -32.03 162.09 -1.93 -33.96 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -0.39 Total: 0.37 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.65 Total: -13.60 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 1.70 Total: -36.58 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 2.44 Total: 2.44 kcal Total: -32.03 -1.93 -33.96 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080300310.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.440 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds