Wall clock time and date at job start Mon Mar 30 2020 16:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.55100 * 2 1 4 4 C 1.53074 * 117.51528 * 214.27433 * 2 1 3 5 5 C 1.53001 * 59.98593 * 252.52804 * 4 2 1 6 6 H 1.09000 * 117.49651 * 252.50078 * 5 4 2 7 7 C 1.52993 * 117.50284 * 107.50034 * 5 4 2 8 8 N 1.46905 * 109.47039 * 116.25364 * 7 5 4 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99982 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46926 * 90.00445 * 14 12 10 16 16 H 1.48506 * 109.46987 * 209.99731 * 14 12 10 17 17 H 1.48494 * 109.47527 * 330.00217 * 14 12 10 18 18 H 1.08996 * 109.46994 * 274.33339 * 1 2 3 19 19 H 1.08997 * 109.46583 * 34.33062 * 1 2 3 20 20 H 1.08997 * 109.47077 * 154.33068 * 1 2 3 21 21 H 1.09001 * 109.46803 * 205.66934 * 3 2 1 22 22 H 1.08999 * 109.47110 * 325.66999 * 3 2 1 23 23 H 1.08998 * 109.47017 * 85.66603 * 3 2 1 24 24 H 1.09003 * 117.49553 * 145.03870 * 4 2 1 25 25 H 1.08998 * 117.50969 * 359.97438 * 4 2 1 26 26 H 1.09001 * 109.47393 * 356.25646 * 7 5 4 27 27 H 1.08998 * 109.47408 * 236.25291 * 7 5 4 28 28 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 3.1713 -0.8747 1.2690 7 6 1.3588 -2.1556 1.4723 8 7 2.2082 -3.0736 2.2429 9 6 1.3978 -4.0838 2.9362 10 6 2.3015 -5.0048 3.7147 11 1 3.3709 -4.8550 3.6960 12 6 1.7632 -6.0395 4.4501 13 7 2.5519 -6.8435 5.1292 14 14 -0.0864 -6.2991 4.4819 15 1 -0.4773 -7.2110 3.3769 16 1 -0.4797 -6.8997 5.7819 17 1 -0.7726 -4.9932 4.3122 18 1 -0.3633 0.0776 1.0247 19 1 -0.3632 0.8486 -0.5796 20 1 -0.3633 -0.9262 -0.4451 21 1 3.1823 1.3086 -0.4452 22 1 1.5810 2.0742 -0.5796 23 1 2.2766 1.7417 1.0247 24 1 3.1725 -0.8761 -1.2676 25 1 1.6124 -1.8601 -1.2672 26 1 0.7935 -2.7200 0.7306 27 1 0.6686 -1.6475 2.1457 28 1 2.7901 -2.5675 2.8936 29 1 0.7076 -3.5894 3.6198 30 1 0.8331 -4.6614 2.2044 31 1 2.1731 -7.5716 5.6462 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232913860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:46:21 Heat of formation + Delta-G solvation = 9.201857 kcal Electronic energy + Delta-G solvation = -10889.136356 eV Core-core repulsion = 8977.723602 eV Total energy + Delta-G solvation = -1911.412754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.63232 -34.96914 -32.31355 -29.59075 -27.87563 -27.34129 -24.29528 -21.06956 -20.81199 -18.52994 -16.76013 -15.04704 -14.96827 -14.52835 -14.02197 -13.71334 -13.15518 -12.59024 -12.46654 -12.30789 -12.18581 -11.76801 -11.67967 -11.24673 -10.88441 -10.63534 -10.49654 -9.90048 -9.64538 -9.34078 -9.23435 -8.57445 -7.41062 -6.04661 -4.02444 3.29708 3.36511 3.39289 3.84255 4.43136 4.68871 4.83988 5.02196 5.09589 5.28028 5.47101 5.60932 5.63918 5.72504 5.86141 5.92509 5.98010 6.00100 6.06723 6.12954 6.17744 6.36768 6.57212 6.79819 7.04197 7.62557 7.93051 8.37338 8.67482 9.03580 9.57395 11.08706 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073526 B = 0.007784 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.728433 B = 3596.036792 C = 3818.487536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.139 4.139 3 C -0.112 4.112 4 C -0.166 4.166 5 C -0.131 4.131 6 H 0.104 0.896 7 C 0.088 3.912 8 N -0.680 5.680 9 C 0.164 3.836 10 C -0.516 4.516 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.268 1.268 18 H 0.058 0.942 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.022 0.978 28 H 0.335 0.665 29 H -0.017 1.017 30 H 0.021 0.979 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 13.514 -9.296 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.139 4.139 3 C -0.169 4.169 4 C -0.203 4.203 5 C -0.149 4.149 6 H 0.122 0.878 7 C -0.042 4.042 8 N -0.310 5.310 9 C 0.036 3.964 10 C -0.554 4.554 11 H 0.097 0.903 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 H 0.077 0.923 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.152 0.848 29 H 0.001 0.999 30 H 0.039 0.961 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.920 12.934 -9.709 16.641 hybrid contribution -1.309 0.179 0.782 1.536 sum -5.229 13.112 -8.927 16.702 Atomic orbital electron populations 1.21308 0.92408 1.01608 1.01719 1.21640 0.94762 0.91304 1.06235 1.21321 0.99765 0.94194 1.01609 1.23245 1.01787 1.00568 0.94718 1.22460 1.00698 0.97949 0.93836 0.87814 1.21472 0.93881 0.92184 0.96638 1.60451 1.23583 1.15882 1.31095 1.19994 0.93256 0.90825 0.92342 1.21080 0.95461 1.11700 1.27171 0.90278 1.24914 0.97832 0.95598 0.95037 1.69904 1.34950 1.17697 1.31437 0.86815 0.86336 0.78741 0.77579 1.20132 1.21177 1.19285 0.92321 0.92600 0.92433 0.92610 0.92497 0.92424 0.89243 0.88993 0.91788 0.96001 0.84786 0.99892 0.96084 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 8.86 37.16 0.33 -0.96 16 2 C -0.14 -1.70 2.70 -154.46 -0.42 -2.11 16 3 C -0.11 -1.15 9.85 37.16 0.37 -0.78 16 4 C -0.17 -2.16 9.47 -26.69 -0.25 -2.42 16 5 C -0.13 -1.93 5.67 -90.62 -0.51 -2.44 16 6 H 0.10 1.54 8.13 -51.93 -0.42 1.11 16 7 C 0.09 1.55 5.05 -3.82 -0.02 1.53 16 8 N -0.68 -14.70 6.49 -115.06 -0.75 -15.44 16 9 C 0.16 4.12 4.51 -4.98 -0.02 4.10 16 10 C -0.52 -15.16 9.87 -34.44 -0.34 -15.50 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.12 13.96 55.43 0.77 -27.34 16 14 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 18 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 19 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 20 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 21 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 22 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.09 1.06 8.05 -51.93 -0.42 0.65 16 25 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 26 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 27 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 28 H 0.33 6.97 8.71 -39.29 -0.34 6.63 16 29 H -0.02 -0.42 7.20 -51.93 -0.37 -0.79 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 257.36 15.07 3.88 3.88 Total: -1.00 -30.72 257.36 -6.97 -37.69 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.24 Total: 0.60 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.97 Total: -16.67 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.03 Total: -42.79 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.72 -6.97 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232913860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.888 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds