Wall clock time and date at job start Mon Mar 30 2020 16:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.55100 * 2 1 4 4 C 1.53074 * 117.51528 * 214.27433 * 2 1 3 5 5 C 1.53001 * 59.98593 * 252.52804 * 4 2 1 6 6 H 1.09000 * 117.49651 * 252.50078 * 5 4 2 7 7 C 1.52993 * 117.50284 * 107.50034 * 5 4 2 8 8 N 1.46905 * 109.47039 * 116.25364 * 7 5 4 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00162 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00023 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99982 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99630 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46926 * 90.00445 * 14 12 10 16 16 H 1.48506 * 109.46987 * 209.99731 * 14 12 10 17 17 H 1.48494 * 109.47527 * 330.00217 * 14 12 10 18 18 H 1.08996 * 109.46994 * 274.33339 * 1 2 3 19 19 H 1.08997 * 109.46583 * 34.33062 * 1 2 3 20 20 H 1.08997 * 109.47077 * 154.33068 * 1 2 3 21 21 H 1.09001 * 109.46803 * 205.66934 * 3 2 1 22 22 H 1.08999 * 109.47110 * 325.66999 * 3 2 1 23 23 H 1.08998 * 109.47017 * 85.66603 * 3 2 1 24 24 H 1.09003 * 117.49553 * 145.03870 * 4 2 1 25 25 H 1.08998 * 117.50969 * 359.97438 * 4 2 1 26 26 H 1.09001 * 109.47393 * 356.25646 * 7 5 4 27 27 H 1.08998 * 109.47408 * 236.25291 * 7 5 4 28 28 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 29 29 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 30 30 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 31 31 H 0.97002 * 119.99560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 3.1713 -0.8747 1.2690 7 6 1.3588 -2.1556 1.4723 8 7 2.2082 -3.0736 2.2429 9 6 1.3978 -4.0838 2.9362 10 6 2.3015 -5.0048 3.7147 11 1 3.3709 -4.8550 3.6960 12 6 1.7632 -6.0395 4.4501 13 7 2.5519 -6.8435 5.1292 14 14 -0.0864 -6.2991 4.4819 15 1 -0.4773 -7.2110 3.3769 16 1 -0.4797 -6.8997 5.7819 17 1 -0.7726 -4.9932 4.3122 18 1 -0.3633 0.0776 1.0247 19 1 -0.3632 0.8486 -0.5796 20 1 -0.3633 -0.9262 -0.4451 21 1 3.1823 1.3086 -0.4452 22 1 1.5810 2.0742 -0.5796 23 1 2.2766 1.7417 1.0247 24 1 3.1725 -0.8761 -1.2676 25 1 1.6124 -1.8601 -1.2672 26 1 0.7935 -2.7200 0.7306 27 1 0.6686 -1.6475 2.1457 28 1 2.7901 -2.5675 2.8936 29 1 0.7076 -3.5894 3.6198 30 1 0.8331 -4.6614 2.2044 31 1 2.1731 -7.5716 5.6462 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232913860.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:46:20 Heat of formation + Delta-G solvation = -11.456943 kcal Electronic energy + Delta-G solvation = -10890.032189 eV Core-core repulsion = 8977.723602 eV Total energy + Delta-G solvation = -1912.308587 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.72693 -36.72067 -34.46659 -30.92058 -29.31150 -28.40529 -25.90802 -23.07764 -21.98545 -19.61605 -18.91056 -16.79154 -16.21058 -16.12556 -15.54798 -14.94793 -14.60138 -14.30468 -13.87295 -13.66848 -13.29925 -13.09747 -12.79619 -12.63459 -12.52641 -12.19802 -11.89797 -11.80984 -11.52141 -10.85364 -10.71315 -10.38279 -9.14209 -8.32540 -6.37654 1.33466 1.35140 1.46421 2.32291 2.78187 3.01134 3.45087 3.80666 3.95147 4.05174 4.24407 4.47848 4.57566 4.70064 4.78837 4.83613 4.88010 4.96486 5.04320 5.07632 5.08829 5.11339 5.29681 5.33796 5.48792 5.51365 5.93914 6.53336 6.63183 6.73899 7.27518 8.84295 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073526 B = 0.007784 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.728433 B = 3596.036792 C = 3818.487536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.165 4.165 5 C -0.154 4.154 6 H 0.099 0.901 7 C 0.093 3.907 8 N -0.690 5.690 9 C 0.174 3.826 10 C -0.532 4.532 11 H 0.037 0.963 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.953 3.047 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.252 1.252 18 H 0.054 0.946 19 H 0.076 0.924 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.336 0.664 29 H -0.013 1.013 30 H 0.023 0.977 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 14.835 -10.347 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.122 4.122 3 C -0.169 4.169 4 C -0.202 4.202 5 C -0.173 4.173 6 H 0.117 0.883 7 C -0.036 4.036 8 N -0.321 5.321 9 C 0.046 3.954 10 C -0.570 4.570 11 H 0.055 0.945 12 C -0.190 4.190 13 N -0.587 5.587 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.175 1.175 18 H 0.073 0.927 19 H 0.095 0.905 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.154 0.846 29 H 0.004 0.996 30 H 0.041 0.959 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.716 14.279 -10.777 18.781 hybrid contribution -0.643 -0.207 1.091 1.283 sum -6.359 14.072 -9.686 18.228 Atomic orbital electron populations 1.21364 0.91686 1.02402 1.01881 1.21789 0.95332 0.91607 1.03443 1.21362 1.00225 0.93174 1.02135 1.23327 1.02545 1.01052 0.93298 1.22337 1.00829 0.99271 0.94818 0.88277 1.21470 0.93900 0.92057 0.96140 1.60366 1.24102 1.16784 1.30846 1.19747 0.92619 0.91016 0.92028 1.21350 0.94296 1.13124 1.28264 0.94500 1.25909 1.03757 0.95021 0.94300 1.70054 1.37667 1.18543 1.32427 0.85630 0.79136 0.79493 0.78154 1.18953 1.20307 1.17545 0.92672 0.90492 0.92826 0.92139 0.90718 0.92305 0.88099 0.89161 0.91962 0.95648 0.84622 0.99552 0.95908 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.86 71.98 0.64 -1.70 16 2 C -0.12 -2.67 2.70 -52.15 -0.14 -2.81 16 3 C -0.11 -1.98 9.85 71.98 0.71 -1.27 16 4 C -0.17 -3.99 9.47 30.62 0.29 -3.70 16 5 C -0.15 -4.34 5.67 -10.79 -0.06 -4.40 16 6 H 0.10 2.87 8.13 -2.39 -0.02 2.85 16 7 C 0.09 3.19 5.05 86.30 0.44 3.63 16 8 N -0.69 -29.82 6.49 -517.93 -3.36 -33.18 16 9 C 0.17 8.71 4.51 85.56 0.39 9.09 16 10 C -0.53 -31.93 9.87 25.60 0.25 -31.67 16 11 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 12 C 0.01 0.46 5.47 84.66 0.46 0.93 16 13 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 14 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 18 H 0.05 1.15 7.83 -2.39 -0.02 1.14 16 19 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 20 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 21 H 0.06 1.02 7.90 -2.39 -0.02 1.00 16 22 H 0.07 1.07 7.92 -2.39 -0.02 1.05 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 2.19 8.05 -2.39 -0.02 2.17 16 25 H 0.09 2.21 7.94 -2.39 -0.02 2.19 16 26 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 27 H 0.03 0.85 7.77 -2.39 -0.02 0.83 16 28 H 0.34 14.21 8.71 -89.69 -0.78 13.42 16 29 H -0.01 -0.64 7.20 -2.39 -0.02 -0.66 16 30 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -65.88 257.36 2.04 -63.84 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.25 Total: 14.40 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 2.97 Total: -31.90 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -3.06 Total: -93.05 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -65.88 2.04 -63.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232913860.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.386 kcal (2) G-P(sol) polarization free energy of solvation -65.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds