Wall clock time and date at job start Mon Mar 30 2020 16:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47212 * 2 1 4 4 H 1.09002 * 109.47235 * 298.35760 * 3 2 1 5 5 C 1.50699 * 109.47462 * 178.35583 * 3 2 1 6 6 H 1.07998 * 120.00537 * 240.00326 * 5 3 2 7 7 C 1.37879 * 120.00031 * 60.00038 * 5 3 2 8 8 N 1.31517 * 119.99974 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00245 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46958 * 90.00096 * 9 7 5 11 11 H 1.48502 * 109.46946 * 210.00089 * 9 7 5 12 12 H 1.48500 * 109.46967 * 330.00019 * 9 7 5 13 13 N 1.46905 * 109.46876 * 58.35839 * 3 2 1 14 14 C 1.47484 * 110.99541 * 172.89558 * 13 3 2 15 15 C 1.53511 * 87.99459 * 138.67267 * 14 13 3 16 16 C 1.47475 * 110.99633 * 268.86285 * 13 3 2 17 17 H 1.09002 * 113.47586 * 106.53660 * 16 13 3 18 18 C 1.53002 * 113.47892 * 336.12472 * 16 13 3 19 19 H 1.08995 * 109.47114 * 63.65882 * 1 2 3 20 20 H 1.09002 * 109.46782 * 183.65381 * 1 2 3 21 21 H 1.08993 * 109.47312 * 303.65082 * 1 2 3 22 22 H 1.09007 * 109.47168 * 239.99690 * 2 1 3 23 23 H 1.09005 * 109.47163 * 120.00430 * 2 1 3 24 24 H 0.96997 * 120.00659 * 179.97438 * 8 7 5 25 25 H 1.09001 * 113.47507 * 253.46625 * 14 13 3 26 26 H 1.08996 * 113.48300 * 23.87877 * 14 13 3 27 27 H 1.08998 * 114.17468 * 87.64952 * 15 14 13 28 28 H 1.09010 * 114.17157 * 220.35662 * 15 14 13 29 29 H 1.08997 * 109.47096 * 74.94656 * 18 16 13 30 30 H 1.09005 * 109.46817 * 194.94143 * 18 16 13 31 31 H 1.08994 * 109.47216 * 314.94051 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7009 1.9477 -0.9044 5 6 3.5464 1.4427 0.0408 6 1 4.0644 1.9181 0.8605 7 6 4.2635 0.8359 -0.9685 8 7 3.6328 0.2565 -1.9666 9 14 6.1308 0.8356 -0.9177 10 1 6.6060 -0.3704 -0.1932 11 1 6.6637 0.8224 -2.3038 12 1 6.6071 2.0545 -0.2158 13 7 1.5182 2.1463 1.1792 14 6 2.1218 3.4860 1.3049 15 6 0.7336 4.0162 1.6902 16 6 0.2387 2.8128 0.8734 17 1 -0.6260 2.3152 1.3126 18 6 0.0519 3.1208 -0.6136 19 1 -0.3633 0.4560 -0.9209 20 1 -0.3633 -1.0256 0.0655 21 1 -0.3633 0.5694 0.8554 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 4.1371 -0.1701 -2.6769 25 1 2.8532 3.5589 2.1099 26 1 2.4926 3.8857 0.3611 27 1 0.5119 3.9540 2.7556 28 1 0.4884 4.9842 1.2531 29 1 -0.1842 2.2009 -1.1483 30 1 -0.7643 3.8327 -0.7374 31 1 0.9709 3.5484 -1.0143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251399527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:46:31 Heat of formation + Delta-G solvation = 34.424674 kcal Electronic energy + Delta-G solvation = -11943.037991 eV Core-core repulsion = 10032.718980 eV Total energy + Delta-G solvation = -1910.319011 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.72875 -33.97251 -31.56217 -29.33285 -27.87170 -25.56390 -23.20103 -22.75165 -19.49480 -17.73857 -16.40152 -15.52747 -15.09004 -14.28129 -13.63391 -12.83853 -12.46066 -12.15685 -11.76960 -11.56045 -11.36246 -11.18862 -10.92597 -10.86925 -10.55027 -10.44336 -9.91461 -9.64347 -9.45645 -9.16717 -8.61340 -8.43705 -7.50719 -5.99601 -4.03714 3.30902 3.37320 3.40606 4.42723 5.01016 5.21838 5.31261 5.55918 5.89907 6.00867 6.04978 6.24549 6.27723 6.36766 6.41705 6.57357 6.59958 6.62284 6.77499 6.90716 6.95961 7.12084 7.25013 7.54402 7.67509 7.86450 8.14836 8.38290 8.55257 9.02724 9.60473 11.06798 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.045209 B = 0.015465 C = 0.012980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.192044 B = 1810.101801 C = 2156.654360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C 0.170 3.830 4 H 0.030 0.970 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.466 5.466 14 C 0.020 3.980 15 C -0.156 4.156 16 C 0.023 3.977 17 H 0.077 0.923 18 C -0.161 4.161 19 H 0.039 0.961 20 H 0.028 0.972 21 H 0.049 0.951 22 H 0.088 0.912 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 4.444 2.798 7.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C 0.063 3.937 4 H 0.047 0.953 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.189 5.189 14 C -0.109 4.109 15 C -0.193 4.193 16 C -0.087 4.087 17 H 0.095 0.905 18 C -0.219 4.219 19 H 0.058 0.942 20 H 0.047 0.953 21 H 0.068 0.932 22 H 0.107 0.893 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.937 3.813 3.146 6.987 hybrid contribution 1.068 0.325 -0.800 1.374 sum -3.869 4.138 2.347 6.131 Atomic orbital electron populations 1.22061 0.99715 0.99050 1.00202 1.21467 0.91279 0.99444 1.02122 1.19972 0.94385 0.91566 0.87785 0.95299 1.21205 0.90777 1.35599 1.07212 0.92297 1.24916 0.98407 0.95340 0.95389 1.69888 1.35073 1.37063 1.11029 0.86570 0.85770 0.78447 0.77066 1.20695 1.21323 1.19987 1.69029 1.01258 1.11629 1.36965 1.23353 0.95176 0.91802 1.00562 1.23317 0.98797 0.97226 1.00008 1.23167 0.96724 0.94574 0.94248 0.90466 1.22124 1.01288 1.01840 0.96652 0.94162 0.95266 0.93177 0.89338 0.94449 0.93031 0.91608 0.91550 0.90202 0.92063 0.91236 0.93433 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.69 37.16 0.32 -2.83 16 2 C -0.10 -2.59 5.41 -26.73 -0.14 -2.74 16 3 C 0.17 4.28 1.33 -68.87 -0.09 4.18 16 4 H 0.03 0.78 4.71 -51.93 -0.24 0.53 16 5 C -0.51 -14.11 7.88 -34.44 -0.27 -14.38 16 6 H 0.06 1.65 7.12 -52.49 -0.37 1.27 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -25.46 11.33 55.43 0.63 -24.83 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.47 -10.32 5.90 -229.71 -1.35 -11.68 16 14 C 0.02 0.41 5.98 -7.55 -0.05 0.37 16 15 C -0.16 -2.57 8.07 -26.14 -0.21 -2.78 16 16 C 0.02 0.42 3.22 -71.37 -0.23 0.19 16 17 H 0.08 1.37 6.84 -51.93 -0.36 1.01 16 18 C -0.16 -2.89 7.86 37.16 0.29 -2.59 16 19 H 0.04 0.80 6.20 -51.93 -0.32 0.48 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.99 5.30 -51.93 -0.28 0.71 16 22 H 0.09 2.41 6.11 -51.92 -0.32 2.09 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.41 6.89 -51.93 -0.36 1.05 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.89 8.11 -51.92 -0.42 0.47 16 29 H 0.07 1.32 5.05 -51.93 -0.26 1.06 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.23 6.08 -51.93 -0.32 0.92 16 LS Contribution 233.28 15.07 3.52 3.52 Total: -1.00 -28.27 233.28 -7.20 -35.47 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.49 Total: 0.00 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.47 Total: -18.99 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.73 Total: -36.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.27 -7.20 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251399527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.894 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds