Wall clock time and date at job start Mon Mar 30 2020 16:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35311 * 126.12159 * 2 1 4 4 C 1.50702 * 126.04475 * 359.93966 * 3 2 1 5 5 C 1.50696 * 109.46927 * 85.00199 * 4 3 2 6 6 H 1.07998 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99780 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00065 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46840 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47325 * 119.99715 * 9 7 5 12 12 H 1.48503 * 109.47106 * 240.00019 * 9 7 5 13 13 C 1.39872 * 107.91683 * 179.97438 * 3 2 1 14 14 N 1.30828 * 108.20306 * 359.97438 * 13 3 2 15 15 N 1.34940 * 126.13005 * 179.68744 * 2 1 3 16 16 C 1.46503 * 126.03754 * 0.03469 * 15 2 1 17 17 H 1.08999 * 109.47015 * 90.00502 * 1 2 3 18 18 H 1.09000 * 109.46646 * 209.99654 * 1 2 3 19 19 H 1.09000 * 109.47248 * 330.00372 * 1 2 3 20 20 H 1.09001 * 109.47318 * 205.00078 * 4 3 2 21 21 H 1.09000 * 109.46832 * 324.99927 * 4 3 2 22 22 H 0.97000 * 120.00478 * 180.02562 * 8 7 5 23 23 H 1.08009 * 125.89832 * 179.97438 * 13 3 2 24 24 H 1.08999 * 109.47072 * 89.99750 * 16 15 2 25 25 H 1.08995 * 109.47552 * 210.00247 * 16 15 2 26 26 H 1.09005 * 109.47194 * 330.00181 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0013 5 6 1.5703 2.9687 1.4136 6 1 1.7161 2.2791 2.2319 7 6 1.1336 4.2524 1.6634 8 7 0.9556 5.0921 0.6669 9 14 0.7960 4.7995 3.4173 10 1 1.0720 3.6758 4.3481 11 1 1.6731 5.9492 3.7547 12 1 -0.6261 5.2081 3.5433 13 6 3.6334 0.6560 0.0006 14 7 3.6334 -0.6523 0.0015 15 7 2.3027 -1.0899 0.0059 16 6 1.8541 -2.4845 0.0128 17 1 -0.3633 -0.0001 -1.0277 18 1 -0.3632 -0.8900 0.5138 19 1 -0.3634 0.8900 0.5138 20 1 2.6189 3.1585 -0.4353 21 1 0.9311 2.6153 -0.5916 22 1 0.6487 5.9953 0.8427 23 1 4.5084 1.2893 0.0004 24 1 1.7433 -2.8356 -1.0131 25 1 2.5897 -3.1003 0.5302 26 1 0.8953 -2.5552 0.5266 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259606289.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:46:53 Heat of formation + Delta-G solvation = 63.225754 kcal Electronic energy + Delta-G solvation = -10474.040278 eV Core-core repulsion = 8554.167222 eV Total energy + Delta-G solvation = -1919.873056 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.45611 -33.60888 -32.68125 -31.49674 -28.55160 -26.08838 -25.39127 -22.49403 -20.01623 -18.47637 -16.22952 -15.72496 -14.97904 -14.44861 -13.63850 -13.04921 -12.78514 -12.38122 -12.17651 -11.98764 -11.70039 -11.36566 -11.07537 -10.72392 -10.52366 -9.98302 -9.43349 -9.30431 -8.52434 -8.33124 -7.27126 -5.94111 -3.97080 2.58387 3.16948 3.33439 3.41111 3.45850 3.74245 4.52225 4.99937 5.37309 5.38665 5.44064 5.55028 5.73173 5.81286 6.07122 6.48519 6.53785 6.70627 7.04263 7.48329 7.65800 7.81156 7.90737 8.03103 8.48557 8.49413 9.09121 9.66302 11.14858 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.060271 B = 0.011221 C = 0.010875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.458033 B = 2494.754703 C = 2574.050269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.057 3.943 3 C -0.183 4.183 4 C 0.086 3.914 5 C -0.504 4.504 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.045 3.955 14 N -0.321 5.321 15 N -0.390 5.390 16 C 0.110 3.890 17 H 0.067 0.933 18 H 0.055 0.945 19 H 0.096 0.904 20 H 0.025 0.975 21 H 0.024 0.976 22 H 0.259 0.741 23 H 0.176 0.824 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -10.270 -1.136 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.194 4.194 4 C 0.048 3.952 5 C -0.543 4.543 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.139 4.139 14 N -0.143 5.143 15 N -0.176 5.176 16 C -0.033 4.033 17 H 0.086 0.914 18 H 0.074 0.926 19 H 0.115 0.885 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.193 0.807 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.441 -11.294 -1.168 11.363 hybrid contribution -0.624 1.061 1.002 1.587 sum -1.065 -10.233 -0.166 10.289 Atomic orbital electron populations 1.20343 0.88009 1.03513 1.02186 1.20763 0.94287 0.86845 1.04864 1.20695 0.91376 0.98012 1.09288 1.17650 0.96268 0.84371 0.96909 1.21210 1.43734 0.96718 0.92591 0.92784 1.25006 0.95863 0.96745 0.96824 1.69965 1.47168 1.05930 1.30572 0.86568 0.77784 0.78615 0.85257 1.19851 1.21041 1.21088 1.23738 0.98446 0.91511 1.00254 1.77126 0.96805 1.13426 1.26893 1.48191 1.04083 1.05239 1.60090 1.21591 1.00392 0.79079 1.02215 0.91438 0.92643 0.88519 0.95696 0.95804 0.93083 0.80719 0.91841 0.90223 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.81 36.01 0.35 -1.02 15 2 C 0.06 1.15 6.93 -82.27 -0.57 0.58 15 3 C -0.18 -4.22 5.29 -105.05 -0.56 -4.78 15 4 C 0.09 2.26 5.01 -29.04 -0.15 2.11 15 5 C -0.50 -14.23 9.09 -34.44 -0.31 -14.55 15 6 H 0.05 1.54 7.74 -52.49 -0.41 1.14 15 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 15 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 15 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 15 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 13 C 0.05 0.97 11.96 -17.37 -0.21 0.77 15 14 N -0.32 -6.65 12.57 30.63 0.39 -6.27 15 15 N -0.39 -7.31 4.01 -63.88 -0.26 -7.57 15 16 C 0.11 1.40 11.27 59.85 0.67 2.07 15 17 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 18 H 0.05 0.75 7.07 -51.93 -0.37 0.38 15 19 H 0.10 1.82 7.89 -51.93 -0.41 1.41 15 20 H 0.02 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.02 0.64 8.01 -51.93 -0.42 0.23 15 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 23 H 0.18 3.33 8.06 -52.48 -0.42 2.91 15 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.08 0.84 7.05 -51.93 -0.37 0.47 15 LS Contribution 232.25 15.07 3.50 3.50 Total: -1.00 -32.14 232.25 -4.73 -36.87 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -3.21 Total: -4.01 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -0.86 Total: -13.32 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.87 Total: -39.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.14 -4.73 -36.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259606289.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.098 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds