Wall clock time and date at job start Mon Mar 30 2020 16:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31605 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46962 * 300.00057 * 3 2 1 6 6 H 1.48505 * 109.47124 * 59.99770 * 3 2 1 7 7 C 1.38774 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00224 * 180.02562 * 7 2 1 9 9 N 1.36837 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.39365 * 119.99797 * 180.02562 * 9 7 2 11 11 C 1.38946 * 120.06319 * 0.02562 * 10 9 7 12 12 C 1.38695 * 119.85919 * 179.97438 * 11 10 9 13 13 N 1.39813 * 120.00515 * 180.02562 * 12 11 10 14 14 C 1.38985 * 119.99225 * 359.97438 * 12 11 10 15 15 C 1.38226 * 120.11537 * 0.02562 * 14 12 11 16 16 C 1.38263 * 120.14233 * 359.97438 * 15 14 12 17 17 F 1.35099 * 119.99306 * 180.27698 * 16 15 14 18 18 H 0.97008 * 120.00166 * 0.02562 * 1 2 3 19 19 H 0.96998 * 119.99914 * 0.02562 * 9 7 2 20 20 H 1.07997 * 120.06682 * 359.95488 * 11 10 9 21 21 H 0.97008 * 120.00110 * 359.97438 * 13 12 11 22 22 H 0.96994 * 120.00278 * 179.97438 * 13 12 11 23 23 H 1.07991 * 119.94437 * 180.02562 * 14 12 11 24 24 H 1.08004 * 119.92767 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7100 1.3465 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0100 -1.2018 -0.0005 8 1 3.0900 -1.2018 -0.0001 9 7 1.3258 -2.3869 -0.0005 10 6 2.0227 -3.5937 -0.0005 11 6 3.4122 -3.5952 0.0000 12 6 4.1014 -4.7987 0.0005 13 7 5.4996 -4.8038 0.0016 14 6 3.4021 -5.9999 0.0011 15 6 2.0199 -5.9976 0.0005 16 6 1.3275 -4.8008 0.0000 17 9 -0.0234 -4.8021 0.0051 18 1 -0.4851 0.8401 -0.0004 19 1 0.3558 -2.3869 -0.0005 20 1 3.9542 -2.6611 -0.0003 21 1 5.9876 -3.9654 0.0016 22 1 5.9816 -5.6455 0.0024 23 1 3.9396 -6.9365 0.0019 24 1 1.4795 -6.9328 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186708.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:51:58 Heat of formation + Delta-G solvation = -24.430449 kcal Electronic energy + Delta-G solvation = -11814.970652 eV Core-core repulsion = 9449.154041 eV Total energy + Delta-G solvation = -2365.816611 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.52594 -38.27742 -35.49039 -33.19127 -31.72994 -28.31047 -27.14217 -24.68704 -21.59233 -20.77943 -17.93727 -16.92144 -16.27045 -15.89730 -14.84342 -14.65528 -14.39773 -13.62871 -13.49581 -12.83223 -12.22755 -11.78781 -11.73257 -11.62593 -11.42395 -10.73964 -10.57801 -10.29877 -9.86578 -9.34425 -8.70186 -7.05753 -6.58234 -6.49888 -3.76819 2.43161 2.59721 3.15035 3.15370 3.19139 4.02094 4.48783 4.65749 5.19147 5.24895 5.59785 5.73263 6.16217 6.46775 6.69975 6.79925 7.14128 7.29462 7.33114 7.39254 7.59232 7.87228 8.30261 8.40467 8.72762 9.31197 9.51608 10.58114 Molecular weight = 196.07amu Principal moments of inertia in cm(-1) A = 0.039791 B = 0.011574 C = 0.008995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.515111 B = 2418.589167 C = 3112.261368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.019 3.981 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.219 3.781 11 C -0.283 4.283 12 C 0.255 3.745 13 N -0.886 5.886 14 C -0.293 4.293 15 C -0.053 4.053 16 C -0.081 4.081 17 F -0.164 7.164 18 H 0.275 0.725 19 H 0.404 0.596 20 H 0.120 0.880 21 H 0.391 0.609 22 H 0.389 0.611 23 H 0.104 0.896 24 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.751 -5.355 -0.001 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.152 5.152 10 C 0.094 3.906 11 C -0.314 4.314 12 C 0.151 3.849 13 N -0.425 5.425 14 C -0.319 4.319 15 C -0.074 4.074 16 C -0.107 4.107 17 F -0.143 7.143 18 H 0.085 0.915 19 H 0.239 0.761 20 H 0.138 0.862 21 H 0.218 0.782 22 H 0.216 0.784 23 H 0.122 0.878 24 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.470 -4.840 0.000 8.080 hybrid contribution 0.077 0.842 0.001 0.845 sum 6.547 -3.999 0.001 7.671 Atomic orbital electron populations 1.69723 1.06028 1.28502 1.48216 1.25350 0.95757 0.99997 0.97332 0.85731 0.79342 0.80854 0.78002 1.19176 1.20524 1.20532 1.19788 0.93119 0.82557 1.47492 0.87820 1.40965 1.08446 1.01847 1.63969 1.17487 0.91470 0.84990 0.96639 1.19544 0.91623 0.96072 1.24127 1.17395 0.82889 0.93405 0.91225 1.42393 1.03720 1.09724 1.86711 1.19592 0.92925 0.95217 1.24183 1.20244 0.93934 0.95129 0.98068 1.16797 0.76066 0.93295 1.24564 1.91308 1.29715 1.97327 1.95961 0.91488 0.76095 0.86249 0.78159 0.78395 0.87824 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 13.05 55.49 0.72 -23.68 14 2 C 0.02 0.50 5.50 -17.45 -0.10 0.40 14 3 Si 0.93 20.01 29.55 -169.99 -5.02 14.99 14 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 14 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 14 6 H -0.28 -5.97 7.11 56.52 0.40 -5.56 14 7 C -0.30 -7.90 9.55 -15.12 -0.14 -8.05 14 8 H 0.10 2.60 5.68 -52.48 -0.30 2.30 14 9 N -0.55 -14.46 5.43 -9.57 -0.05 -14.51 14 10 C 0.22 5.27 6.62 -83.78 -0.55 4.71 14 11 C -0.28 -6.18 9.15 -39.15 -0.36 -6.54 14 12 C 0.25 4.79 6.75 -83.77 -0.57 4.23 14 13 N -0.89 -12.59 9.09 32.41 0.29 -12.29 14 14 C -0.29 -5.38 9.89 -39.31 -0.39 -5.77 14 15 C -0.05 -1.04 10.01 -39.58 -0.40 -1.44 14 16 C -0.08 -1.86 7.31 -39.18 -0.29 -2.14 14 17 F -0.16 -3.82 16.63 2.25 0.04 -3.79 14 18 H 0.28 7.08 8.31 -40.82 -0.34 6.74 14 19 H 0.40 11.02 7.37 -40.82 -0.30 10.72 14 20 H 0.12 2.59 5.96 -52.49 -0.31 2.28 14 21 H 0.39 4.99 8.84 -40.82 -0.36 4.63 14 22 H 0.39 4.47 8.84 -40.82 -0.36 4.11 14 23 H 0.10 1.62 8.06 -52.49 -0.42 1.19 14 24 H 0.11 1.90 8.06 -52.48 -0.42 1.47 14 LS Contribution 220.99 15.07 3.33 3.33 Total: -1.00 -28.25 220.99 -5.09 -33.34 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -1.61 Total: 17.20 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.79 Total: -14.60 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.97 Total: -50.48 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.79 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.25 -5.09 -33.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186708.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.914 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds