Wall clock time and date at job start Mon Mar 30 2020 16:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.27471 * 2 1 4 4 C 1.54595 * 110.30949 * 122.09224 * 2 1 3 5 5 C 1.54936 * 102.92152 * 140.87426 * 4 2 1 6 6 N 1.48530 * 103.22872 * 322.58294 * 5 4 2 7 7 C 1.46895 * 111.00370 * 159.71834 * 6 5 4 8 8 C 1.50702 * 109.46770 * 69.87585 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72214 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48504 * 109.47196 * 60.00645 * 12 10 8 14 14 H 1.48504 * 109.46887 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47679 * 300.00280 * 12 10 8 16 16 C 1.47907 * 105.81893 * 39.20930 * 6 5 4 17 17 H 1.08992 * 109.91966 * 94.02193 * 16 6 5 18 18 C 1.52997 * 109.91735 * 215.31932 * 16 6 5 19 19 O 1.42899 * 109.46945 * 293.54286 * 18 16 6 20 20 H 1.09004 * 109.47054 * 299.36236 * 1 2 3 21 21 H 1.08995 * 109.47335 * 59.36428 * 1 2 3 22 22 H 1.09000 * 109.46885 * 179.36366 * 1 2 3 23 23 H 1.08999 * 110.72233 * 22.51486 * 4 2 1 24 24 H 1.08998 * 110.87582 * 259.30196 * 4 2 1 25 25 H 1.08998 * 110.66699 * 204.15506 * 5 4 2 26 26 H 1.08996 * 110.66862 * 81.02263 * 5 4 2 27 27 H 1.09004 * 109.47258 * 309.87909 * 7 6 5 28 28 H 1.08994 * 109.47601 * 189.87501 * 7 6 5 29 29 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 30 30 H 1.08999 * 109.47582 * 53.54277 * 18 16 6 31 31 H 1.09002 * 109.47497 * 173.54703 * 18 16 6 32 32 H 0.96702 * 113.99964 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0666 -0.7703 1.2283 5 6 3.2855 -1.5342 0.6528 6 7 2.8313 -1.9243 -0.7065 7 6 3.9751 -2.2276 -1.5769 8 6 4.6247 -3.5098 -1.1241 9 1 4.2274 -4.0459 -0.2749 10 6 5.7226 -4.0017 -1.7978 11 7 6.2062 -3.3491 -2.8321 12 14 6.5231 -5.5950 -1.2411 13 1 5.5326 -6.6989 -1.3152 14 1 7.6765 -5.9042 -2.1240 15 1 6.9972 -5.4484 0.1585 16 6 2.0645 -0.7694 -1.2222 17 1 2.7161 -0.1242 -1.8113 18 6 0.8969 -1.2604 -2.0804 19 8 1.4037 -1.8903 -3.2587 20 1 -0.3633 0.5039 0.8957 21 1 -0.3634 0.5236 -0.8842 22 1 -0.3633 -1.0276 -0.0114 23 1 1.3172 -1.4668 1.6043 24 1 2.3787 -0.0811 2.0130 25 1 3.5046 -2.4171 1.2532 26 1 4.1564 -0.8813 0.5949 27 1 4.6990 -1.4145 -1.5223 28 1 3.6301 -2.3384 -2.6049 29 1 6.9788 -3.6950 -3.3058 30 1 0.3041 -1.9769 -1.5117 31 1 0.2713 -0.4133 -2.3617 32 1 0.7173 -2.2264 -3.8512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299911607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:57:32 Heat of formation + Delta-G solvation = -50.824883 kcal Electronic energy + Delta-G solvation = -13400.701162 eV Core-core repulsion = 11168.003261 eV Total energy + Delta-G solvation = -2232.697901 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.91676 -35.69051 -33.53859 -31.82226 -29.85052 -27.43904 -25.03552 -24.01821 -22.03723 -20.20268 -18.56307 -16.99981 -16.17961 -15.39712 -14.63705 -14.42270 -14.07056 -13.28000 -13.03399 -12.63728 -12.36298 -12.12300 -11.88008 -11.27692 -11.01341 -10.86201 -10.57754 -10.44700 -10.34180 -10.18041 -10.05239 -9.66476 -9.33001 -8.97270 -8.29583 -7.22082 -5.89672 -3.89892 3.40083 3.43418 3.46817 4.51701 4.71045 4.90788 5.03155 5.26156 5.38315 5.45538 5.69111 5.77047 5.78072 5.79307 5.97991 6.02082 6.14777 6.21638 6.38175 6.41973 6.58566 6.70368 6.77728 7.42576 7.48771 7.92050 8.16629 8.31670 8.36237 8.67729 9.17562 9.72594 11.21463 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.010133 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.740003 B = 2762.560561 C = 3134.729756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.046 3.954 6 N -0.504 5.504 7 C 0.186 3.814 8 C -0.502 4.502 9 H 0.059 0.941 10 C 0.053 3.947 11 N -0.899 5.899 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.279 1.279 16 C 0.065 3.935 17 H 0.048 0.952 18 C 0.095 3.905 19 O -0.557 6.557 20 H 0.050 0.950 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.035 0.965 27 H -0.015 1.015 28 H 0.049 0.951 29 H 0.260 0.740 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 6.003 4.404 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.082 4.082 6 N -0.228 5.228 7 C 0.060 3.940 8 C -0.541 4.541 9 H 0.077 0.923 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.204 1.204 16 C -0.045 4.045 17 H 0.066 0.934 18 C 0.017 3.983 19 O -0.361 6.361 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.003 0.997 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.278 5.679 4.545 12.591 hybrid contribution 0.574 -0.249 -0.114 0.636 sum -9.704 5.429 4.431 11.970 Atomic orbital electron populations 1.21932 0.95178 1.02093 1.01009 1.21944 0.95760 0.98694 0.95186 0.91187 1.22622 0.98576 0.98466 0.96257 1.23028 0.94637 0.98263 0.92268 1.64777 1.24483 1.31519 1.02056 1.19929 0.85372 0.95209 0.93470 1.21123 1.11593 1.07266 1.14109 0.92283 1.24981 0.97167 0.97440 0.95139 1.69970 1.24451 1.39281 1.20203 0.86594 0.78696 0.83946 0.78307 1.20268 1.21431 1.20430 1.22315 0.95324 0.92700 0.94131 0.93377 1.22326 0.95156 0.94767 0.86049 1.86711 1.36548 1.78883 1.33914 0.93089 0.92743 0.91933 0.91230 0.92040 0.90468 0.94654 0.99686 0.93308 0.93071 0.93348 0.94652 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.91 37.16 0.29 -1.45 16 2 C -0.10 -1.46 3.59 -89.26 -0.32 -1.78 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.12 -1.88 6.61 -24.87 -0.16 -2.04 16 5 C 0.05 0.94 6.03 -1.90 -0.01 0.93 16 6 N -0.50 -11.59 4.87 -224.01 -1.09 -12.68 16 7 C 0.19 5.21 4.38 -4.98 -0.02 5.18 16 8 C -0.50 -14.93 8.82 -34.44 -0.30 -15.23 16 9 H 0.06 1.73 7.61 -52.49 -0.40 1.33 16 10 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 12 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.06 1.25 2.79 -66.64 -0.19 1.06 16 17 H 0.05 1.02 7.77 -51.93 -0.40 0.62 16 18 C 0.10 1.61 5.50 37.16 0.20 1.81 16 19 O -0.56 -10.70 12.17 -35.23 -0.43 -11.13 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.60 6.79 -51.93 -0.35 0.24 16 22 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 23 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.60 7.94 -51.93 -0.41 1.19 16 26 H 0.04 0.75 7.85 -51.93 -0.41 0.34 16 27 H -0.01 -0.44 7.90 -51.93 -0.41 -0.85 16 28 H 0.05 1.50 6.69 -51.93 -0.35 1.15 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.05 0.80 6.89 -51.93 -0.36 0.44 16 31 H 0.04 0.49 6.61 -51.93 -0.34 0.15 16 32 H 0.37 4.95 9.12 45.56 0.42 5.36 16 LS Contribution 254.79 15.07 3.84 3.84 Total: -1.00 -33.29 254.79 -6.75 -40.05 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.18 Total: -0.25 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.61 Total: -10.03 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.35 Total: -39.98 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.43 Total: -11.13 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.29 -6.75 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299911607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.779 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds