Wall clock time and date at job start Mon Mar 30 2020 16:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46846 * 110.99942 * 2 1 4 4 C 1.53035 * 109.52744 * 174.16069 * 3 2 1 5 5 C 1.53123 * 109.27774 * 59.17321 * 4 3 2 6 6 C 1.53114 * 109.16198 * 302.35270 * 5 4 3 7 7 H 1.09007 * 109.53693 * 297.69232 * 6 5 4 8 8 O 1.42896 * 109.50429 * 177.59525 * 6 5 4 9 9 C 1.42895 * 114.00295 * 150.19452 * 8 6 5 10 10 C 1.50709 * 109.47314 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00052 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99893 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00408 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99708 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47247 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47304 * 119.99834 * 14 12 10 17 17 H 1.48494 * 109.47137 * 239.99794 * 14 12 10 18 18 C 1.46844 * 111.00328 * 235.78846 * 2 1 3 19 19 H 1.09006 * 109.47009 * 56.05018 * 1 2 3 20 20 H 1.08997 * 109.46904 * 176.04366 * 1 2 3 21 21 H 1.08996 * 109.47363 * 296.04745 * 1 2 3 22 22 H 1.09008 * 109.46456 * 294.17536 * 3 2 1 23 23 H 1.09003 * 109.46474 * 54.14041 * 3 2 1 24 24 H 1.08995 * 109.50534 * 179.12351 * 4 3 2 25 25 H 1.09011 * 109.49854 * 299.24031 * 4 3 2 26 26 H 1.09000 * 109.52219 * 182.44440 * 5 4 3 27 27 H 1.08998 * 109.51778 * 62.25946 * 5 4 3 28 28 H 1.09004 * 109.47024 * 299.99889 * 9 8 6 29 29 H 1.08998 * 109.47073 * 60.00058 * 9 8 6 30 30 H 0.97003 * 120.00467 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.46271 * 305.85568 * 18 2 1 32 32 H 1.08998 * 109.46026 * 65.82128 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1189 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0208 7 1 3.7814 -1.3842 -0.0955 8 8 4.0318 -1.6041 -2.1349 9 6 4.1173 -3.0133 -1.9143 10 6 4.6692 -3.6822 -3.1469 11 1 4.9283 -3.0903 -4.0124 12 6 4.8423 -5.0498 -3.1701 13 7 4.5263 -5.7706 -2.1165 14 14 5.5256 -5.8789 -4.6982 15 1 5.7988 -4.8539 -5.7374 16 1 6.7860 -6.5859 -4.3562 17 1 4.5348 -6.8563 -5.2161 18 6 1.9954 -0.7708 -1.1337 19 1 -0.3633 0.5740 -0.8525 20 1 -0.3633 -1.0252 -0.0709 21 1 -0.3634 0.4512 0.9232 22 1 1.7325 1.8609 -0.9376 23 1 1.5634 1.9258 0.8329 24 1 3.9098 2.3513 0.1311 25 1 3.7813 0.8568 1.0907 26 1 5.1998 0.4714 -0.8904 27 1 3.8888 1.0355 -1.9559 28 1 4.7768 -3.2093 -1.0689 29 1 3.1244 -3.4084 -1.6998 30 1 4.6485 -6.7328 -2.1327 31 1 1.5635 -1.7715 -1.1241 32 1 1.7325 -0.2709 -2.0659 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:58:45 Heat of formation + Delta-G solvation = -56.902140 kcal Electronic energy + Delta-G solvation = -13016.384132 eV Core-core repulsion = 10783.422701 eV Total energy + Delta-G solvation = -2232.961431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.91388 -36.18506 -33.08129 -32.48434 -29.63222 -27.04066 -26.50136 -22.95665 -22.38561 -21.79815 -19.51698 -16.48915 -15.89661 -15.30905 -15.03757 -14.48372 -14.36652 -13.93399 -13.30582 -12.97766 -12.61517 -12.42235 -12.03952 -11.72887 -11.41539 -11.02804 -10.93357 -10.81900 -10.55956 -10.32833 -10.22767 -9.78683 -9.06835 -8.82225 -8.21335 -8.10837 -6.09657 -4.11522 3.29753 3.36143 3.42615 4.01489 4.37593 4.82813 5.08589 5.11872 5.25690 5.27046 5.46030 5.53575 5.56341 5.68818 5.78176 5.91284 5.93890 6.02887 6.08773 6.22482 6.31138 6.58609 6.60904 7.10688 7.21094 7.24965 7.46084 7.81478 8.17457 8.60937 9.02567 9.53385 11.01768 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.060023 B = 0.007358 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.373800 B = 3804.585156 C = 4043.747497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.114 4.114 5 C -0.117 4.117 6 C 0.093 3.907 7 H 0.060 0.940 8 O -0.390 6.390 9 C 0.195 3.805 10 C -0.515 4.515 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.036 3.964 19 H 0.022 0.978 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.263 0.737 31 H 0.077 0.923 32 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 11.885 4.379 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.073 4.073 4 C -0.152 4.152 5 C -0.155 4.155 6 C 0.034 3.966 7 H 0.078 0.922 8 O -0.309 6.309 9 C 0.121 3.879 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.091 4.091 19 H 0.041 0.959 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.958 11.543 4.680 13.406 hybrid contribution -0.128 -0.378 -1.212 1.276 sum -5.086 11.165 3.468 12.749 Atomic orbital electron populations 1.22333 0.87523 1.02008 1.00270 1.61867 1.07381 1.13451 1.44135 1.22109 0.95851 0.89332 1.00032 1.21552 0.94266 0.99901 0.99454 1.21638 1.00555 0.95040 0.98280 1.21778 0.90879 0.92586 0.91378 0.92229 1.87886 1.83922 1.22209 1.36841 1.20255 0.95618 0.74799 0.97251 1.21115 1.42496 0.91782 0.99966 0.91536 1.24950 0.95657 0.96967 0.96933 1.69975 1.48312 1.06402 1.28985 0.86297 0.78558 0.79254 0.82486 1.19500 1.20810 1.20848 1.22639 0.97294 0.98337 0.90873 0.95912 0.91315 0.91617 0.95062 0.91075 0.91374 0.91054 0.91264 0.91843 0.97605 0.97676 0.92707 0.90415 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.62 60.07 0.58 0.91 16 2 N -0.54 -8.18 4.91 -242.96 -1.19 -9.37 16 3 C 0.05 0.70 5.46 -3.84 -0.02 0.68 16 4 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 5 C -0.12 -1.89 5.65 -26.61 -0.15 -2.04 16 6 C 0.09 1.84 2.77 -26.66 -0.07 1.77 16 7 H 0.06 1.23 7.79 -51.93 -0.40 0.82 16 8 O -0.39 -9.67 9.97 -35.23 -0.35 -10.02 16 9 C 0.20 5.45 5.50 36.01 0.20 5.65 16 10 C -0.52 -15.40 9.43 -34.44 -0.32 -15.72 16 11 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 14 Si 0.91 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.04 0.65 5.08 -3.84 -0.02 0.64 16 19 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 20 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 23 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 29 H 0.01 0.16 7.89 -51.93 -0.41 -0.25 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.08 1.50 7.79 -51.93 -0.40 1.09 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 263.06 15.07 3.96 3.96 Total: -1.00 -31.11 263.06 -7.34 -38.45 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -5.40 Total: -5.42 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.07 Total: -8.21 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.46 Total: -35.77 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.35 Total: -10.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.11 -7.34 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.449 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds