Wall clock time and date at job start Mon Mar 30 2020 16:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37101 * 119.99518 * 2 1 4 4 H 1.08006 * 120.00083 * 151.59690 * 3 2 1 5 5 C 1.38948 * 120.00080 * 331.59966 * 3 2 1 6 6 N 1.31402 * 120.00105 * 350.10296 * 5 3 2 7 7 Si 1.86810 * 119.99709 * 170.10867 * 5 3 2 8 8 H 1.48493 * 109.47187 * 90.00089 * 7 5 3 9 9 H 1.48508 * 109.46643 * 209.99878 * 7 5 3 10 10 H 1.48494 * 109.46892 * 329.99264 * 7 5 3 11 11 C 1.34772 * 120.00616 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00199 * 177.80046 * 11 2 1 13 13 C 1.50703 * 119.99931 * 358.08520 * 11 2 1 14 14 C 1.52997 * 115.55154 * 53.14655 * 13 11 2 15 15 C 1.52998 * 117.49909 * 198.82627 * 13 11 2 16 16 C 1.52999 * 117.49423 * 267.44881 * 13 11 2 17 17 H 1.09001 * 117.50317 * 359.97438 * 16 13 11 18 18 F 1.39899 * 117.50368 * 145.02114 * 16 13 11 19 19 H 1.09009 * 109.47109 * 210.40016 * 1 2 3 20 20 H 1.09003 * 109.47517 * 330.40334 * 1 2 3 21 21 H 1.08999 * 109.47476 * 90.40569 * 1 2 3 22 22 H 0.97004 * 120.00218 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.46684 * 50.38841 * 14 13 11 24 24 H 1.09002 * 109.47273 * 170.38261 * 14 13 11 25 25 H 1.08996 * 109.47704 * 290.38907 * 14 13 11 26 26 H 1.08998 * 117.49944 * 214.97368 * 15 13 11 27 27 H 1.08995 * 117.50129 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1329 1.2438 0.4449 5 6 1.5809 2.3183 -0.5723 6 7 0.4799 2.2122 -1.2816 7 14 2.3809 3.9894 -0.3335 8 1 3.3567 4.2318 -1.4263 9 1 1.3373 5.0458 -0.3584 10 1 3.0842 4.0192 0.9740 11 6 2.1389 -1.1671 -0.0005 12 8 3.3512 -1.1674 -0.0408 13 6 1.3862 -2.4719 0.0425 14 6 0.3078 -2.6473 -1.0285 15 6 2.1581 -3.7188 0.4786 16 6 1.1249 -3.0917 1.4167 17 1 1.4978 -2.5559 2.2897 18 9 -0.0820 -3.7756 1.5982 19 1 -0.3634 -0.8864 0.5201 20 1 -0.3634 0.8936 0.5076 21 1 -0.3634 -0.0073 -1.0276 22 1 0.0822 3.0017 -1.6809 23 1 0.7285 -2.4205 -2.0082 24 1 -0.0519 -3.6762 -1.0170 25 1 -0.5214 -1.9702 -0.8237 26 1 1.8975 -4.6642 0.0028 27 1 3.2106 -3.5955 0.7340 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307345310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:57:49 Heat of formation + Delta-G solvation = -50.377565 kcal Electronic energy + Delta-G solvation = -13329.830520 eV Core-core repulsion = 10810.547138 eV Total energy + Delta-G solvation = -2519.283382 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.33593 -39.00353 -35.72737 -34.59209 -31.63455 -28.47240 -26.09058 -24.94911 -22.17044 -21.69676 -18.39122 -17.00641 -16.49941 -15.71029 -15.04390 -14.47172 -14.29294 -13.94661 -13.55907 -13.05323 -12.49385 -12.09132 -11.91046 -11.82109 -11.34056 -11.23657 -11.16031 -10.76974 -10.39122 -10.33291 -9.85853 -9.43333 -9.02177 -8.42631 -7.64727 -6.34094 -3.95432 3.14132 3.23679 3.28695 3.50075 4.00389 4.11182 4.56333 4.70435 4.93922 5.09850 5.31411 5.33535 5.67767 5.94475 6.10401 6.15389 6.29279 6.33847 6.43295 6.58084 6.85106 7.18997 7.53116 8.13284 8.45505 9.14573 9.37665 9.95104 10.70356 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.057286 B = 0.010399 C = 0.009693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.662456 B = 2692.027944 C = 2888.023518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.435 5.435 3 C -0.310 4.310 4 H 0.096 0.904 5 C 0.034 3.966 6 N -0.880 5.880 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.479 3.521 12 O -0.584 6.584 13 C -0.146 4.146 14 C -0.119 4.119 15 C -0.160 4.160 16 C 0.026 3.974 17 H 0.131 0.869 18 F -0.186 7.186 19 H 0.034 0.966 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.268 0.732 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -6.349 2.706 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.153 5.153 3 C -0.437 4.437 4 H 0.114 0.886 5 C -0.170 4.170 6 N -0.518 5.518 7 Si 0.754 3.246 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.266 3.734 12 O -0.468 6.468 13 C -0.150 4.150 14 C -0.176 4.176 15 C -0.198 4.198 16 C -0.011 4.011 17 H 0.148 0.852 18 F -0.167 7.167 19 H 0.052 0.948 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.388 -6.186 2.588 7.118 hybrid contribution 0.032 0.825 -0.057 0.828 sum -2.356 -5.361 2.530 6.379 Atomic orbital electron populations 1.21686 0.81310 0.99117 1.01367 1.43439 1.05496 1.04379 1.61944 1.19612 1.03012 0.84874 1.36246 0.88624 1.25411 0.96540 1.00295 0.94769 1.69957 1.20070 1.30355 1.31438 0.85915 0.78663 0.80960 0.79057 1.20241 1.20807 1.19398 1.18926 0.87186 0.83334 0.83962 1.90515 1.13726 1.86641 1.55964 1.22252 1.01127 0.95162 0.96507 1.21506 0.97039 1.01830 0.97189 1.23647 0.98664 0.96299 1.01154 1.22244 0.83471 0.99778 0.95593 0.85155 1.92755 1.46760 1.80803 1.96340 0.94804 0.91735 0.92161 0.92164 0.91542 0.92492 0.90239 0.87787 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.46 7.04 59.84 0.42 2.88 15 2 N -0.44 -11.26 3.00 -122.19 -0.37 -11.63 15 3 C -0.31 -8.66 9.14 -14.93 -0.14 -8.80 15 4 H 0.10 2.77 7.54 -52.48 -0.40 2.38 15 5 C 0.03 0.89 5.12 -17.47 -0.09 0.80 15 6 N -0.88 -23.51 10.92 55.50 0.61 -22.90 15 7 Si 0.93 20.71 29.56 -169.99 -5.03 15.68 15 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 11 C 0.48 11.86 7.06 -10.99 -0.08 11.78 15 12 O -0.58 -16.36 16.21 5.55 0.09 -16.27 15 13 C -0.15 -2.83 1.52 -155.66 -0.24 -3.06 15 14 C -0.12 -2.04 8.65 37.16 0.32 -1.72 15 15 C -0.16 -2.62 9.69 -26.73 -0.26 -2.88 15 16 C 0.03 0.43 7.42 -26.73 -0.20 0.23 15 17 H 0.13 2.10 8.14 -51.93 -0.42 1.68 15 18 F -0.19 -3.09 17.08 2.25 0.04 -3.05 15 19 H 0.03 0.66 5.66 -51.92 -0.29 0.37 15 20 H 0.06 1.52 7.26 -51.93 -0.38 1.14 15 21 H 0.06 1.40 7.02 -51.93 -0.36 1.03 15 22 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.06 0.84 7.98 -51.93 -0.41 0.43 15 25 H 0.08 1.36 4.95 -51.93 -0.26 1.10 15 26 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 27 H 0.12 1.96 7.80 -51.93 -0.41 1.55 15 LS Contribution 234.69 15.07 3.54 3.54 Total: -1.00 -30.29 234.69 -4.29 -34.57 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.91 Total: 0.82 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.25 Total: -0.76 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.24 Total: -34.53 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.09 Total: -16.27 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.29 -4.29 -34.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307345310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.805 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds