Wall clock time and date at job start Mon Mar 30 2020 16:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37101 * 119.99518 * 2 1 4 4 H 1.08006 * 120.00083 * 151.59690 * 3 2 1 5 5 C 1.38948 * 120.00080 * 331.59966 * 3 2 1 6 6 N 1.31402 * 120.00105 * 350.10296 * 5 3 2 7 7 Si 1.86810 * 119.99709 * 170.10867 * 5 3 2 8 8 H 1.48493 * 109.47187 * 90.00089 * 7 5 3 9 9 H 1.48508 * 109.46643 * 209.99878 * 7 5 3 10 10 H 1.48494 * 109.46892 * 329.99264 * 7 5 3 11 11 C 1.34772 * 120.00616 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00199 * 177.80046 * 11 2 1 13 13 C 1.50703 * 119.99931 * 358.08520 * 11 2 1 14 14 C 1.52997 * 115.55154 * 53.14655 * 13 11 2 15 15 C 1.52998 * 117.49909 * 198.82627 * 13 11 2 16 16 C 1.52999 * 117.49423 * 267.44881 * 13 11 2 17 17 H 1.09001 * 117.50317 * 359.97438 * 16 13 11 18 18 F 1.39899 * 117.50368 * 145.02114 * 16 13 11 19 19 H 1.09009 * 109.47109 * 210.40016 * 1 2 3 20 20 H 1.09003 * 109.47517 * 330.40334 * 1 2 3 21 21 H 1.08999 * 109.47476 * 90.40569 * 1 2 3 22 22 H 0.97004 * 120.00218 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.46684 * 50.38841 * 14 13 11 24 24 H 1.09002 * 109.47273 * 170.38261 * 14 13 11 25 25 H 1.08996 * 109.47704 * 290.38907 * 14 13 11 26 26 H 1.08998 * 117.49944 * 214.97368 * 15 13 11 27 27 H 1.08995 * 117.50129 * 359.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1329 1.2438 0.4449 5 6 1.5809 2.3183 -0.5723 6 7 0.4799 2.2122 -1.2816 7 14 2.3809 3.9894 -0.3335 8 1 3.3567 4.2318 -1.4263 9 1 1.3373 5.0458 -0.3584 10 1 3.0842 4.0192 0.9740 11 6 2.1389 -1.1671 -0.0005 12 8 3.3512 -1.1674 -0.0408 13 6 1.3862 -2.4719 0.0425 14 6 0.3078 -2.6473 -1.0285 15 6 2.1581 -3.7188 0.4786 16 6 1.1249 -3.0917 1.4167 17 1 1.4978 -2.5559 2.2897 18 9 -0.0820 -3.7756 1.5982 19 1 -0.3634 -0.8864 0.5201 20 1 -0.3634 0.8936 0.5076 21 1 -0.3634 -0.0073 -1.0276 22 1 0.0822 3.0017 -1.6809 23 1 0.7285 -2.4205 -2.0082 24 1 -0.0519 -3.6762 -1.0170 25 1 -0.5214 -1.9702 -0.8237 26 1 1.8975 -4.6642 0.0028 27 1 3.2106 -3.5955 0.7340 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307345310.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:57:48 Heat of formation + Delta-G solvation = -69.472490 kcal Electronic energy + Delta-G solvation = -13330.658538 eV Core-core repulsion = 10810.547138 eV Total energy + Delta-G solvation = -2520.111400 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.66820 -40.80977 -37.35913 -36.56736 -33.65452 -29.95055 -27.95203 -26.87793 -23.69185 -23.25965 -20.08696 -18.97866 -18.13929 -17.33688 -16.79916 -16.17851 -15.83596 -15.68008 -15.23748 -14.75510 -14.03706 -13.75808 -13.54639 -13.19788 -13.08154 -12.98149 -12.89021 -12.61028 -12.26444 -12.12541 -11.30043 -11.04197 -10.85562 -10.33079 -9.67386 -8.36405 -6.07113 1.35561 1.40523 1.53274 1.78630 2.24754 2.52919 2.89738 3.02884 3.23187 3.52320 3.82134 3.97836 4.04977 4.56291 4.66052 4.77988 4.80752 4.87280 4.96423 5.13019 5.22005 5.33556 5.41226 6.08417 6.44220 7.11515 7.40280 7.97208 8.66600 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.057286 B = 0.010399 C = 0.009693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.662456 B = 2692.027944 C = 2888.023518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.451 5.451 3 C -0.349 4.349 4 H 0.072 0.928 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 0.992 3.008 8 H -0.277 1.277 9 H -0.267 1.267 10 H -0.268 1.268 11 C 0.471 3.529 12 O -0.628 6.628 13 C -0.172 4.172 14 C -0.112 4.112 15 C -0.141 4.141 16 C 0.044 3.956 17 H 0.136 0.864 18 F -0.179 7.179 19 H 0.065 0.935 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.275 0.725 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.137 0.863 27 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -6.994 2.955 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.168 5.168 3 C -0.477 4.477 4 H 0.090 0.910 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.815 3.185 8 H -0.202 1.202 9 H -0.191 1.191 10 H -0.192 1.192 11 C 0.260 3.740 12 O -0.516 6.516 13 C -0.176 4.176 14 C -0.169 4.169 15 C -0.178 4.178 16 C 0.007 3.993 17 H 0.153 0.847 18 F -0.160 7.160 19 H 0.083 0.917 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.155 0.845 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.232 -6.842 2.837 8.081 hybrid contribution 0.284 0.988 -0.145 1.038 sum -2.948 -5.855 2.692 7.086 Atomic orbital electron populations 1.21597 0.79620 0.99799 1.00966 1.43705 1.06650 1.04405 1.62077 1.19626 1.03054 0.86799 1.38202 0.91009 1.26186 0.96967 1.03246 0.93877 1.70022 1.20561 1.31578 1.31132 0.84966 0.78028 0.76728 0.78798 1.20232 1.19099 1.19234 1.19811 0.87079 0.84875 0.82271 1.90468 1.15854 1.87690 1.57546 1.22136 1.02790 0.93372 0.99265 1.21469 0.96050 1.03670 0.95725 1.23772 0.98143 0.96065 0.99842 1.22164 0.83684 0.98990 0.94434 0.84665 1.92778 1.46501 1.80493 1.96199 0.91700 0.93230 0.93054 0.91555 0.92816 0.89353 0.90537 0.84521 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.54 7.04 127.77 0.90 6.44 15 2 N -0.45 -23.70 3.00 -658.89 -1.98 -25.68 15 3 C -0.35 -20.02 9.14 84.04 0.77 -19.25 15 4 H 0.07 4.35 7.54 -2.91 -0.02 4.33 15 5 C 0.00 -0.02 5.12 84.93 0.43 0.41 15 6 N -0.90 -47.75 10.92 21.66 0.24 -47.52 15 7 Si 0.99 42.44 29.56 68.60 2.03 44.47 15 8 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 9 H -0.27 -10.65 7.11 99.48 0.71 -9.94 15 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 11 C 0.47 23.52 7.06 87.66 0.62 24.14 15 12 O -0.63 -36.09 16.21 -3.07 -0.05 -36.14 15 13 C -0.17 -6.36 1.52 -52.93 -0.08 -6.44 15 14 C -0.11 -3.62 8.65 71.98 0.62 -3.00 15 15 C -0.14 -4.23 9.69 30.59 0.30 -3.93 15 16 C 0.04 1.36 7.42 30.59 0.23 1.58 15 17 H 0.14 4.09 8.14 -2.39 -0.02 4.07 15 18 F -0.18 -5.29 17.08 44.97 0.77 -4.52 15 19 H 0.06 2.46 5.66 -2.38 -0.01 2.45 15 20 H 0.05 2.33 7.26 -2.39 -0.02 2.32 15 21 H 0.05 2.38 7.02 -2.39 -0.02 2.36 15 22 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 23 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.09 2.28 7.98 -2.39 -0.02 2.26 15 25 H 0.08 2.47 4.95 -2.39 -0.01 2.46 15 26 H 0.14 3.22 8.14 -2.39 -0.02 3.20 15 27 H 0.11 3.50 7.80 -2.39 -0.02 3.48 15 Total: -1.00 -65.39 234.69 5.97 -59.42 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.17 Total: 10.01 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 3.79 Total: -0.04 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.74 Total: -73.19 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.05 Total: -36.14 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.77 Total: -4.52 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.39 5.97 -59.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307345310.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.052 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds