Wall clock time and date at job start Mon Mar 30 2020 16:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46898 * 109.47092 * 295.00148 * 3 2 1 14 14 C 1.46906 * 111.00183 * 84.99986 * 13 3 2 15 15 H 1.09002 * 115.54636 * 350.66798 * 14 13 3 16 16 C 1.52996 * 117.50166 * 136.37857 * 14 13 3 17 17 C 1.52988 * 60.00104 * 107.48804 * 16 14 13 18 18 F 1.39900 * 117.50104 * 252.50824 * 17 16 14 19 19 F 1.39904 * 117.52026 * 107.48012 * 17 16 14 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 26 26 H 1.00904 * 110.99887 * 208.95040 * 13 3 2 27 27 H 1.09006 * 117.49701 * 214.98102 * 16 14 13 28 28 H 1.09000 * 117.49912 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6514 2.0992 -1.2552 14 6 0.2913 2.6468 -1.1638 15 1 -0.2730 2.3581 -0.2770 16 6 0.0553 4.0499 -1.7262 17 6 -0.4869 2.8270 -2.4686 18 9 0.1513 2.4578 -3.6576 19 9 -1.8683 2.6087 -2.4324 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 5.8770 0.4816 2.1128 26 1 2.3140 2.8171 -1.5079 27 1 -0.6643 4.6848 -1.2093 28 1 0.9093 4.5669 -2.1637 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:58:34 Heat of formation + Delta-G solvation = -87.095152 kcal Electronic energy + Delta-G solvation = -13801.018985 eV Core-core repulsion = 11102.060147 eV Total energy + Delta-G solvation = -2698.958838 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.50524 -48.19858 -39.07120 -36.19409 -34.08962 -31.80864 -28.83476 -24.52641 -23.46444 -22.51916 -21.81062 -19.06185 -18.64465 -17.55849 -17.19516 -16.73656 -15.87340 -15.43821 -14.98922 -14.89104 -14.54810 -14.38187 -14.29724 -14.00726 -13.67369 -13.33362 -12.84197 -12.62406 -12.36408 -11.99788 -11.79713 -11.23398 -11.17671 -10.88186 -10.67001 -9.21633 -8.32763 -6.38436 1.32607 1.35669 1.46443 2.14740 2.29238 2.30330 2.99944 3.11603 3.44989 3.73555 3.92826 4.28338 4.39880 4.42619 4.58020 4.66549 4.81821 4.90335 5.07051 5.12310 5.25476 5.45859 5.64235 5.90056 6.38719 6.51791 6.73308 7.28000 8.83294 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049557 B = 0.010039 C = 0.009173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.868679 B = 2788.455048 C = 3051.674918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.197 3.803 4 H 0.014 0.986 5 C -0.529 4.529 6 H 0.042 0.958 7 C 0.017 3.983 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.298 1.298 12 H -0.241 1.241 13 N -0.648 5.648 14 C 0.024 3.976 15 H 0.140 0.860 16 C -0.173 4.173 17 C 0.172 3.828 18 F -0.173 7.173 19 F -0.171 7.171 20 H 0.062 0.938 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.052 0.948 25 H 0.267 0.733 26 H 0.350 0.650 27 H 0.150 0.850 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 4.176 -2.253 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.089 3.911 4 H 0.032 0.968 5 C -0.568 4.568 6 H 0.061 0.939 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.226 1.226 12 H -0.164 1.164 13 N -0.279 5.279 14 C -0.090 4.090 15 H 0.157 0.843 16 C -0.213 4.213 17 C 0.134 3.866 18 F -0.154 7.154 19 F -0.152 7.152 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.532 3.514 -2.488 14.201 hybrid contribution 0.332 0.081 0.724 0.801 sum -13.200 3.595 -1.764 13.794 Atomic orbital electron populations 1.21963 0.95061 1.02079 1.01696 1.21848 0.96048 0.98179 0.99951 1.19447 0.93243 0.91796 0.86651 0.96819 1.21364 0.91263 1.38324 1.05805 0.93928 1.25769 0.95872 0.96004 1.00443 1.70025 1.10790 1.46638 1.30892 0.85853 0.79733 0.79540 0.77380 1.19577 1.22614 1.16444 1.59907 1.00648 1.33104 1.34207 1.23997 0.93383 0.96734 0.94874 0.84251 1.25065 1.04563 0.92093 0.99532 1.20952 0.74897 1.07355 0.83392 1.92967 1.80702 1.92863 1.48859 1.92969 1.29798 1.95894 1.96554 0.91927 0.92459 0.92130 0.94320 0.92938 0.92366 0.82881 0.83253 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 8.58 71.98 0.62 -4.29 15 2 C -0.12 -5.05 5.11 30.59 0.16 -4.90 15 3 C 0.20 8.64 1.78 44.17 0.08 8.72 15 4 H 0.01 0.61 6.79 -2.39 -0.02 0.59 15 5 C -0.53 -28.92 9.17 25.60 0.23 -28.69 15 6 H 0.04 2.58 7.86 -2.91 -0.02 2.55 15 7 C 0.02 0.98 5.45 84.66 0.46 1.44 15 8 N -0.94 -57.54 13.96 21.45 0.30 -57.24 15 9 Si 0.95 43.26 24.41 68.60 1.67 44.94 15 10 H -0.27 -11.93 6.83 99.48 0.68 -11.25 15 11 H -0.30 -13.61 7.11 99.48 0.71 -12.91 15 12 H -0.24 -9.92 6.53 99.48 0.65 -9.27 15 13 N -0.65 -24.57 6.39 -473.33 -3.03 -27.60 15 14 C 0.02 0.70 4.07 44.91 0.18 0.88 15 15 H 0.14 3.87 6.08 -2.39 -0.01 3.86 15 16 C -0.17 -3.86 10.20 30.59 0.31 -3.55 15 17 C 0.17 4.96 5.23 30.59 0.16 5.12 15 18 F -0.17 -5.84 17.43 44.97 0.78 -5.05 15 19 F -0.17 -4.89 17.60 44.97 0.79 -4.10 15 20 H 0.06 1.99 5.76 -2.39 -0.01 1.98 15 21 H 0.06 1.69 7.92 -2.39 -0.02 1.67 15 22 H 0.06 1.75 8.14 -2.38 -0.02 1.73 15 23 H 0.04 1.67 3.22 -2.39 -0.01 1.66 15 24 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 26 H 0.35 13.25 8.01 -89.69 -0.72 12.53 15 27 H 0.15 2.39 8.14 -2.38 -0.02 2.37 15 28 H 0.13 2.70 8.09 -2.39 -0.02 2.68 15 Total: -1.00 -62.43 236.31 3.10 -59.33 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.38 Total: 14.99 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 2.20 Total: -25.26 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.73 Total: -84.84 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 1.58 Total: -9.16 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.67 Total: 44.94 kcal Total: -62.43 3.10 -59.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.766 kcal (2) G-P(sol) polarization free energy of solvation -62.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds