Wall clock time and date at job start Mon Mar 30 2020 16:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.08994 * 109.47081 * 55.00175 * 3 2 1 5 5 C 1.50700 * 109.47410 * 175.00246 * 3 2 1 6 6 H 1.07990 * 120.00516 * 119.99519 * 5 3 2 7 7 C 1.37884 * 119.99809 * 300.00083 * 5 3 2 8 8 N 1.31520 * 119.99886 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00301 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47049 * 59.99987 * 9 7 5 11 11 H 1.48495 * 109.47369 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47145 * 300.00197 * 9 7 5 13 13 N 1.46898 * 109.47140 * 294.99768 * 3 2 1 14 14 C 1.46906 * 110.99888 * 84.99977 * 13 3 2 15 15 H 1.08996 * 115.54874 * 9.41700 * 14 13 3 16 16 C 1.53002 * 117.49634 * 223.74674 * 14 13 3 17 17 C 1.53003 * 117.49872 * 155.08874 * 14 13 3 18 18 F 1.39901 * 117.49892 * 214.98403 * 17 14 13 19 19 F 1.39903 * 117.49782 * 359.97173 * 17 14 13 20 20 H 1.08998 * 109.46854 * 60.00205 * 1 2 3 21 21 H 1.08994 * 109.46772 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47035 * 300.00430 * 1 2 3 23 23 H 1.09006 * 109.47377 * 239.99818 * 2 1 3 24 24 H 1.09002 * 109.47286 * 119.99993 * 2 1 3 25 25 H 0.97000 * 120.00205 * 180.02562 * 8 7 5 26 26 H 1.00902 * 111.00533 * 321.04383 * 13 3 2 27 27 H 1.08990 * 117.49890 * 359.97438 * 16 14 13 28 28 H 1.08997 * 117.49352 * 145.02463 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.5005 2.2799 1.3808 11 1 6.3978 0.2168 2.6503 12 1 6.5967 0.1453 0.2343 13 7 1.6514 2.0992 -1.2552 14 6 0.2913 2.6467 -1.1638 15 1 -0.1542 2.6353 -0.1691 16 6 -0.6402 2.4274 -2.3577 17 6 -0.0621 3.8179 -2.0828 18 9 -0.9326 4.7920 -1.5821 19 9 0.9351 4.2858 -2.9453 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8293 -0.0613 2.9498 26 1 1.7344 1.4653 -2.0359 27 1 -0.2437 1.8774 -3.2109 28 1 -1.6985 2.2722 -2.1483 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152608.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:58:36 Heat of formation + Delta-G solvation = -75.266344 kcal Electronic energy + Delta-G solvation = -13686.555259 eV Core-core repulsion = 10988.109357 eV Total energy + Delta-G solvation = -2698.445902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.14104 -46.82042 -37.53095 -34.44571 -31.83235 -29.84879 -26.41303 -22.95888 -22.28984 -20.99256 -20.01402 -17.30961 -16.82771 -15.86045 -15.31116 -14.83710 -14.37138 -13.82880 -13.51947 -13.20132 -13.15926 -12.98875 -12.62149 -12.08820 -11.52815 -11.30765 -10.91757 -10.82208 -10.76192 -10.24794 -10.11800 -9.79822 -9.68104 -9.00572 -8.40248 -7.43490 -6.05530 -4.09591 3.32458 3.36367 3.39432 3.40875 3.69503 4.35305 4.56510 4.75747 5.05458 5.24915 5.41297 5.62615 5.92378 6.05917 6.07558 6.14143 6.31099 6.72521 6.83157 7.05919 7.21079 7.64596 7.77566 8.12477 8.31117 8.43488 8.96906 9.55692 11.00948 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.009418 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.338570 B = 2972.412058 C = 3374.218062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.152 4.152 3 C 0.218 3.782 4 H 0.040 0.960 5 C -0.501 4.501 6 H 0.064 0.936 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.642 5.642 14 C 0.057 3.943 15 H 0.127 0.873 16 C -0.212 4.212 17 C 0.180 3.820 18 F -0.173 7.173 19 F -0.160 7.160 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.045 0.955 23 H 0.035 0.965 24 H 0.103 0.897 25 H 0.262 0.738 26 H 0.338 0.662 27 H 0.117 0.883 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 1.089 -5.846 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C 0.112 3.888 4 H 0.057 0.943 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.271 5.271 14 C -0.058 4.058 15 H 0.145 0.855 16 C -0.252 4.252 17 C 0.142 3.858 18 F -0.154 7.154 19 F -0.140 7.140 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.135 0.865 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.819 1.614 -5.498 8.907 hybrid contribution 0.354 -0.579 -0.047 0.681 sum -6.465 1.035 -5.545 8.580 Atomic orbital electron populations 1.22043 0.99368 0.99768 1.00248 1.22299 0.91802 1.01794 1.03229 1.19372 0.95856 0.88674 0.84924 0.94250 1.21089 0.90705 1.36684 1.05529 0.91784 1.24933 0.98484 0.95271 0.95632 1.69853 1.35061 1.38933 1.09625 0.86520 0.85212 0.78304 0.77143 1.20211 1.21404 1.20297 1.60314 1.16274 1.41573 1.08923 1.23790 0.91755 0.94637 0.95580 0.85512 1.24975 1.02081 0.95137 1.02988 1.20949 0.86342 0.81201 0.97351 1.92959 1.69046 1.65874 1.87474 1.92985 1.60531 1.90177 1.70321 0.93906 0.94552 0.93636 0.94585 0.87931 0.92848 0.84181 0.86524 0.86792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.85 37.16 0.33 -2.48 15 2 C -0.15 -3.33 5.24 -26.73 -0.14 -3.47 15 3 C 0.22 5.18 2.18 -68.87 -0.15 5.03 15 4 H 0.04 1.03 7.57 -51.93 -0.39 0.64 15 5 C -0.50 -13.47 8.84 -34.44 -0.30 -13.78 15 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 7 C 0.06 1.56 5.29 -17.81 -0.09 1.46 15 8 N -0.90 -24.73 11.29 55.43 0.63 -24.10 15 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 13 N -0.64 -13.09 6.32 -100.95 -0.64 -13.73 15 14 C 0.06 0.98 4.09 -67.71 -0.28 0.71 15 15 H 0.13 2.19 7.11 -51.93 -0.37 1.82 15 16 C -0.21 -2.88 9.09 -26.69 -0.24 -3.12 15 17 C 0.18 3.03 5.26 -26.69 -0.14 2.89 15 18 F -0.17 -2.93 17.60 2.25 0.04 -2.89 15 19 F -0.16 -2.97 17.44 2.25 0.04 -2.93 15 20 H 0.04 0.67 4.97 -51.93 -0.26 0.42 15 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.04 0.82 8.13 -51.93 -0.42 0.40 15 23 H 0.04 0.77 8.04 -51.93 -0.42 0.35 15 24 H 0.10 2.58 5.95 -51.93 -0.31 2.27 15 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 26 H 0.34 6.40 8.20 -39.29 -0.32 6.08 15 27 H 0.12 1.44 8.09 -51.93 -0.42 1.02 15 28 H 0.11 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 242.81 15.07 3.66 3.66 Total: -1.00 -27.49 242.81 -5.62 -33.11 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.30 Total: 3.55 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.02 Total: -12.75 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.01 Total: -37.83 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.08 Total: -5.82 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.49 -5.62 -33.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152608.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.158 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds