Wall clock time and date at job start Mon Mar 30 2020 16:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46798 * 2 1 4 4 H 1.09000 * 109.46837 * 304.99988 * 3 2 1 5 5 C 1.50693 * 109.46915 * 185.00066 * 3 2 1 6 6 H 1.08005 * 119.99854 * 239.99900 * 5 3 2 7 7 C 1.37878 * 120.00083 * 59.99957 * 5 3 2 8 8 N 1.31511 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99899 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47276 * 120.00245 * 9 7 5 12 12 H 1.48507 * 109.47088 * 240.00288 * 9 7 5 13 13 N 1.46901 * 109.47021 * 65.00181 * 3 2 1 14 14 C 1.46905 * 110.99870 * 274.99736 * 13 3 2 15 15 H 1.08997 * 115.54685 * 350.58764 * 14 13 3 16 16 C 1.53000 * 117.50002 * 204.91391 * 14 13 3 17 17 C 1.53003 * 117.49737 * 136.25194 * 14 13 3 18 18 F 1.39896 * 117.49924 * 214.97893 * 17 14 13 19 19 F 1.39899 * 117.49787 * 0.02562 * 17 14 13 20 20 H 1.08993 * 109.47239 * 59.99896 * 1 2 3 21 21 H 1.09007 * 109.46943 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47320 * 299.99560 * 1 2 3 23 23 H 1.08995 * 109.46805 * 240.00332 * 2 1 3 24 24 H 1.09003 * 109.46918 * 119.99664 * 2 1 3 25 25 H 0.97003 * 119.99872 * 179.97438 * 8 7 5 26 26 H 1.00901 * 111.00067 * 38.94911 * 13 3 2 27 27 H 1.09004 * 117.49839 * 0.02562 * 16 14 13 28 28 H 1.08994 * 117.49778 * 144.99338 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8801 -1.3811 10 1 6.5987 1.5454 -0.1936 11 1 6.4962 -0.5188 -1.4627 12 1 6.3999 1.6159 -2.6091 13 7 1.6513 2.0993 1.2553 14 6 0.2912 2.6467 1.1638 15 1 -0.1543 2.6352 0.1691 16 6 -0.0623 3.8179 2.0827 17 6 -0.6404 2.4273 2.3576 18 9 -1.9987 2.2280 2.0889 19 9 -0.1314 1.7213 3.4528 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8292 -0.0602 -2.9503 26 1 1.7342 1.4652 2.0358 27 1 0.7146 4.1825 2.7548 28 1 -0.7402 4.5769 1.6925 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 16:58:38 Heat of formation + Delta-G solvation = -76.257765 kcal Electronic energy + Delta-G solvation = -13815.470477 eV Core-core repulsion = 11116.981584 eV Total energy + Delta-G solvation = -2698.488894 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.30577 -46.98884 -37.40851 -34.49948 -31.87520 -29.78144 -26.47521 -23.04152 -22.13726 -20.96622 -20.00002 -17.38107 -16.99978 -15.94576 -15.65573 -14.85825 -14.11962 -13.69950 -13.47747 -13.35551 -13.22851 -13.11221 -12.61792 -11.98686 -11.44789 -11.29614 -11.17808 -10.85771 -10.64879 -10.35940 -10.08509 -9.78274 -9.51666 -9.07326 -8.41440 -7.46706 -6.06264 -4.10473 3.28483 3.36553 3.39766 3.41894 3.59666 4.30709 4.52826 4.83902 4.99521 5.24424 5.43244 5.75426 5.95193 6.09007 6.10288 6.15503 6.36052 6.77284 6.84360 7.08215 7.22049 7.65667 7.76931 8.11630 8.29220 8.42756 8.96279 9.54860 11.00328 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.054096 B = 0.009057 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.472777 B = 3090.865249 C = 3319.875485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.152 4.152 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.642 5.642 14 C 0.060 3.940 15 H 0.127 0.873 16 C -0.179 4.179 17 C 0.145 3.855 18 F -0.172 7.172 19 F -0.165 7.165 20 H 0.045 0.955 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.103 0.897 24 H 0.035 0.965 25 H 0.261 0.739 26 H 0.340 0.660 27 H 0.120 0.880 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 3.220 5.398 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C 0.109 3.891 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.272 5.272 14 C -0.055 4.055 15 H 0.145 0.855 16 C -0.218 4.218 17 C 0.106 3.894 18 F -0.153 7.153 19 F -0.146 7.146 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.121 0.879 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.138 0.862 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.943 3.671 5.079 8.637 hybrid contribution 0.173 -0.997 0.108 1.017 sum -5.770 2.674 5.187 8.207 Atomic orbital electron populations 1.22014 0.99309 0.99875 0.99971 1.22308 0.91777 1.01866 1.03237 1.19408 0.95922 0.88780 0.85015 0.94174 1.21140 0.90613 1.36636 1.05475 0.91683 1.24941 0.98499 0.95274 0.95660 1.69876 1.34888 1.38994 1.09602 0.86412 0.85224 0.77579 0.78019 1.19683 1.21132 1.21073 1.60579 1.15519 1.41883 1.09169 1.24015 0.90037 0.97209 0.94219 0.85515 1.24668 1.02394 0.91378 1.03390 1.21276 0.77606 0.99125 0.91401 1.92967 1.32643 1.96045 1.93640 1.92952 1.86015 1.80354 1.55232 0.93567 0.94448 0.94505 0.87879 0.94575 0.92943 0.83906 0.86196 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.85 37.16 0.33 -2.71 15 2 C -0.15 -3.50 5.24 -26.73 -0.14 -3.64 15 3 C 0.22 5.17 2.18 -68.87 -0.15 5.02 15 4 H 0.04 1.04 7.57 -51.93 -0.39 0.65 15 5 C -0.50 -13.37 8.84 -34.44 -0.30 -13.68 15 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 15 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 15 8 N -0.89 -24.73 11.29 55.43 0.63 -24.10 15 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 15 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 15 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 13 N -0.64 -13.20 6.47 -100.95 -0.65 -13.86 15 14 C 0.06 1.04 4.09 -67.71 -0.28 0.76 15 15 H 0.13 2.19 7.11 -51.93 -0.37 1.83 15 16 C -0.18 -2.54 10.43 -26.69 -0.28 -2.82 15 17 C 0.14 2.37 4.12 -26.69 -0.11 2.26 15 18 F -0.17 -2.85 17.60 2.25 0.04 -2.81 15 19 F -0.16 -2.88 16.65 2.25 0.04 -2.84 15 20 H 0.05 0.89 8.13 -51.93 -0.42 0.47 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.04 0.68 4.97 -51.93 -0.26 0.43 15 23 H 0.10 2.66 5.95 -51.93 -0.31 2.36 15 24 H 0.04 0.82 8.04 -51.93 -0.42 0.40 15 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 26 H 0.34 6.90 7.46 -39.29 -0.29 6.61 15 27 H 0.12 1.64 8.14 -51.93 -0.42 1.21 15 28 H 0.11 1.34 8.14 -51.93 -0.42 0.91 15 LS Contribution 241.70 15.07 3.64 3.64 Total: -1.00 -27.06 241.70 -5.63 -32.69 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.27 Total: 4.70 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -1.03 Total: -13.36 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.03 Total: -37.96 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.08 Total: -5.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.06 -5.63 -32.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.568 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds