Wall clock time and date at job start Mon Mar 30 2020 17:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34124 * 125.98933 * 2 1 4 4 C 1.30500 * 109.25771 * 180.02562 * 3 2 1 5 5 N 1.35051 * 108.69321 * 359.76770 * 4 3 2 6 6 H 0.97003 * 126.39142 * 180.26667 * 5 4 3 7 7 C 1.34669 * 125.98754 * 180.02562 * 2 1 3 8 8 C 1.50699 * 126.58983 * 359.96206 * 7 2 1 9 9 N 1.46902 * 109.47219 * 284.41807 * 8 7 2 10 10 C 1.46899 * 110.99974 * 288.19354 * 9 8 7 11 11 C 1.46902 * 110.99945 * 164.24256 * 9 8 7 12 12 C 1.50698 * 109.46868 * 190.00281 * 11 9 8 13 13 H 1.08001 * 120.00079 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99650 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00435 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99869 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46991 * 59.99757 * 16 14 12 18 18 H 1.48492 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46953 * 299.99906 * 16 14 12 20 20 H 1.09003 * 109.47166 * 264.79330 * 1 2 3 21 21 H 1.09004 * 109.47047 * 24.78879 * 1 2 3 22 22 H 1.08995 * 109.47275 * 144.78958 * 1 2 3 23 23 H 1.08001 * 125.65561 * 180.02562 * 4 3 2 24 24 H 1.09006 * 109.46921 * 164.42040 * 8 7 2 25 25 H 1.09003 * 109.47288 * 44.42165 * 8 7 2 26 26 H 1.09006 * 109.46730 * 64.59591 * 10 9 8 27 27 H 1.09000 * 109.47293 * 184.59209 * 10 9 8 28 28 H 1.08998 * 109.47508 * 304.59958 * 10 9 8 29 29 H 1.09001 * 109.46700 * 310.00008 * 11 9 8 30 30 H 1.08997 * 109.46774 * 69.99940 * 11 9 8 31 31 H 0.97000 * 120.00600 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5912 -0.6402 0.0043 6 1 4.3913 -1.1886 0.0087 7 6 2.2984 -1.0897 -0.0005 8 6 1.8472 -2.5275 -0.0003 9 7 1.3722 -2.8916 1.3413 10 6 2.4932 -3.0040 2.2840 11 6 0.5895 -4.1341 1.3034 12 6 -0.0824 -4.3453 2.6357 13 1 0.0583 -3.6284 3.4311 14 6 -0.8759 -5.4542 2.8395 15 7 -1.0468 -6.3275 1.8711 16 14 -1.7082 -5.7164 4.4912 17 1 -2.6102 -4.5722 4.7781 18 1 -2.4995 -6.9723 4.4530 19 1 -0.6770 -5.8127 5.5554 20 1 -0.3634 -0.0933 1.0234 21 1 -0.3633 0.9330 -0.4309 22 1 -0.3633 -0.8396 -0.5925 23 1 4.4005 1.3687 -0.0003 24 1 2.6828 -3.1706 -0.2768 25 1 1.0377 -2.6544 -0.7192 26 1 2.9636 -2.0285 2.4071 27 1 2.1235 -3.3534 3.2481 28 1 3.2242 -3.7135 1.8964 29 1 -0.1672 -4.0632 0.5221 30 1 1.2514 -4.9741 1.0931 31 1 -1.6048 -7.1079 2.0146 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687713226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:01:08 Heat of formation + Delta-G solvation = 33.543253 kcal Electronic energy + Delta-G solvation = -13669.086278 eV Core-core repulsion = 11371.424943 eV Total energy + Delta-G solvation = -2297.661335 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.93853 -38.24727 -34.74953 -33.95402 -32.40469 -29.54977 -28.65283 -27.05786 -25.27248 -22.62415 -22.27793 -20.37090 -18.78159 -18.20181 -16.91815 -16.36350 -16.11990 -15.34009 -15.28604 -15.11558 -14.04826 -13.73509 -13.58605 -13.55517 -13.35593 -12.96420 -12.88562 -12.61844 -12.56657 -12.33105 -11.89483 -11.37306 -10.88949 -10.72471 -10.59792 -9.16080 -8.99653 -8.19174 -6.28734 1.13883 1.42463 1.45153 1.53027 2.21527 2.31752 2.42497 3.13568 3.45157 3.77788 4.01625 4.15518 4.43996 4.49793 4.54344 4.60750 4.68588 4.96860 5.00960 5.13918 5.18006 5.20554 5.26900 5.36179 5.65234 5.87734 6.05069 6.29907 6.57964 6.67376 6.86492 7.21447 7.40680 8.91287 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051655 B = 0.007233 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.929004 B = 3870.181734 C = 3981.168486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.004 4.004 3 N -0.536 5.536 4 C 0.196 3.804 5 N -0.558 5.558 6 H 0.431 0.569 7 C -0.017 4.017 8 C 0.133 3.867 9 N -0.540 5.540 10 C 0.046 3.954 11 C 0.209 3.791 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.269 1.269 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.251 0.749 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.010 0.990 30 H -0.033 1.033 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 9.303 -3.330 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.132 4.132 3 N -0.256 5.256 4 C -0.088 4.088 5 N -0.164 5.164 6 H 0.272 0.728 7 C -0.133 4.133 8 C 0.004 3.996 9 N -0.264 5.264 10 C -0.102 4.102 11 C 0.084 3.916 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.193 4.193 15 N -0.573 5.573 16 Si 0.790 3.210 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.194 1.194 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.267 0.733 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.028 0.972 30 H -0.015 1.015 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.087 10.325 -3.208 14.123 hybrid contribution 0.646 -2.157 0.390 2.286 sum 9.733 8.168 -2.818 13.015 Atomic orbital electron populations 1.19905 0.87858 1.01921 1.01837 1.20645 0.96962 0.88336 1.07270 1.70137 1.02133 1.31352 1.22026 1.25694 0.97493 0.82312 1.03343 1.43167 1.07699 1.08865 1.56630 0.72842 1.20786 0.84581 0.96233 1.11685 1.20304 0.98780 0.88618 0.91855 1.61942 1.22474 1.35286 1.06719 1.22138 0.91701 0.99267 0.97112 1.19392 0.91284 0.84288 0.96683 1.21415 1.28931 1.06959 0.98899 0.92149 1.25839 0.97192 0.95549 1.00743 1.70058 1.40114 1.12883 1.34277 0.85494 0.78595 0.77461 0.79427 1.19522 1.20792 1.19362 0.92385 0.91248 0.91679 0.73342 0.94066 0.89880 0.92051 0.92415 0.96341 0.97196 1.01532 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 10.17 71.24 0.72 -1.17 16 2 C 0.00 -0.13 7.09 41.39 0.29 0.17 16 3 N -0.54 -16.95 11.25 -188.31 -2.12 -19.07 16 4 C 0.20 4.39 13.04 180.26 2.35 6.74 16 5 N -0.56 -12.71 6.15 -186.49 -1.15 -13.85 16 6 H 0.43 6.76 8.96 -92.71 -0.83 5.93 16 7 C -0.02 -0.53 5.97 40.95 0.24 -0.29 16 8 C 0.13 4.66 5.20 85.56 0.44 5.11 16 9 N -0.54 -22.90 4.70 -931.63 -4.38 -27.28 16 10 C 0.05 1.75 9.24 127.69 1.18 2.93 16 11 C 0.21 10.89 4.71 85.56 0.40 11.30 16 12 C -0.52 -29.39 8.39 25.60 0.21 -29.17 16 13 H 0.06 3.36 7.16 -2.91 -0.02 3.34 16 14 C 0.01 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 16 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 23 H 0.25 2.83 8.06 -2.91 -0.02 2.80 16 24 H 0.04 1.32 7.97 -2.38 -0.02 1.30 16 25 H 0.08 2.99 7.45 -2.39 -0.02 2.97 16 26 H 0.06 2.06 7.62 -2.38 -0.02 2.04 16 27 H 0.06 2.41 6.67 -2.39 -0.02 2.40 16 28 H 0.02 0.65 8.02 -2.39 -0.02 0.63 16 29 H 0.01 0.55 7.86 -2.39 -0.02 0.54 16 30 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -68.12 265.72 1.28 -66.84 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.29 Total: 6.05 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.32 Total: -3.64 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -7.36 Total: -115.34 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.12 1.28 -66.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687713226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.386 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds