Wall clock time and date at job start Mon Mar 30 2020 17:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47199 * 2 1 4 4 N 1.30833 * 125.89867 * 270.02565 * 3 2 1 5 5 N 1.40084 * 108.20683 * 179.97438 * 4 3 2 6 6 H 0.97005 * 126.03910 * 179.97438 * 5 4 3 7 7 C 1.34947 * 107.92592 * 0.02562 * 5 4 3 8 8 C 1.35314 * 107.74361 * 359.97438 * 7 5 4 9 9 C 1.50703 * 126.03885 * 180.26527 * 8 7 5 10 10 N 1.46505 * 109.46865 * 259.68642 * 9 8 7 11 11 C 1.46497 * 120.00295 * 270.00116 * 10 9 8 12 12 C 1.36940 * 119.99351 * 90.00512 * 10 9 8 13 13 H 1.07993 * 120.00645 * 22.27068 * 12 10 9 14 14 C 1.38819 * 119.99320 * 202.27768 * 12 10 9 15 15 N 1.31615 * 120.00485 * 11.40243 * 14 12 10 16 16 Si 1.86804 * 119.99481 * 191.40458 * 14 12 10 17 17 H 1.48504 * 109.46915 * 90.00251 * 16 14 12 18 18 H 1.48503 * 109.46728 * 209.99753 * 16 14 12 19 19 H 1.48493 * 109.47253 * 329.99982 * 16 14 12 20 20 H 1.09000 * 109.46849 * 59.99636 * 1 2 3 21 21 H 1.08996 * 109.47154 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46584 * 299.99721 * 1 2 3 23 23 H 1.09007 * 109.47037 * 240.00124 * 2 1 3 24 24 H 1.08998 * 109.47576 * 120.00269 * 2 1 3 25 25 H 1.07999 * 126.13050 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.46918 * 19.68873 * 9 8 7 27 27 H 1.08996 * 109.47182 * 139.69055 * 9 8 7 28 28 H 1.08998 * 109.47220 * 93.65218 * 11 10 9 29 29 H 1.08999 * 109.46860 * 213.65719 * 11 10 9 30 30 H 1.09004 * 109.47220 * 333.65073 * 11 10 9 31 31 H 0.96994 * 120.00320 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2877 2.1442 -1.0598 5 7 2.7322 3.4026 -0.6341 6 1 2.9928 4.1400 -1.2080 7 6 2.7348 3.4076 0.7154 8 6 2.3060 2.1940 1.1330 9 6 2.1458 1.7551 2.5658 10 7 3.2980 0.9399 2.9585 11 6 3.2674 -0.5122 2.7670 12 6 4.4036 1.5354 3.5046 13 1 4.3186 2.5036 3.9752 14 6 5.6338 0.8943 3.4532 15 7 5.7908 -0.1687 2.6932 16 14 7.0665 1.5404 4.4629 17 1 7.0634 0.8913 5.7986 18 1 8.3415 1.2331 3.7662 19 1 6.9337 3.0103 4.6266 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 3.0260 4.2325 1.3486 26 1 2.0849 2.6323 3.2098 27 1 1.2337 1.1668 2.6657 28 1 3.7208 -0.7619 1.8077 29 1 3.8244 -0.9963 3.5692 30 1 2.2340 -0.8589 2.7817 31 1 6.6503 -0.6168 2.6576 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237650708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:02:34 Heat of formation + Delta-G solvation = 68.356225 kcal Electronic energy + Delta-G solvation = -14077.221203 eV Core-core repulsion = 11781.069472 eV Total energy + Delta-G solvation = -2296.151731 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96321 -37.39465 -35.02432 -33.44682 -31.17702 -30.89716 -27.91168 -26.93768 -24.79861 -23.25882 -21.45672 -20.06980 -18.84014 -18.24798 -16.71566 -15.85763 -15.66342 -15.13374 -14.87429 -14.79987 -14.67794 -13.80631 -13.30853 -13.16791 -12.98276 -12.79202 -12.57375 -12.22654 -12.12269 -11.95641 -11.90869 -11.70770 -11.17597 -10.55969 -10.13820 -9.24919 -8.67206 -7.74377 -5.19798 1.13028 1.48137 1.49366 1.57292 1.99029 2.20780 2.57917 3.40729 3.88546 4.01660 4.07899 4.36750 4.55783 4.58323 4.66308 4.87326 4.91073 5.04600 5.11499 5.12277 5.36655 5.37677 5.46967 5.50595 5.70563 5.81965 5.94318 6.41503 6.64483 6.92557 7.24412 7.98359 8.42414 9.29459 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.010593 C = 0.009324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.038962 B = 2642.643604 C = 3002.387322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 C 0.081 3.919 4 N -0.339 5.339 5 N -0.478 5.478 6 H 0.447 0.553 7 C 0.060 3.940 8 C -0.254 4.254 9 C 0.218 3.782 10 N -0.608 5.608 11 C 0.182 3.818 12 C -0.246 4.246 13 H 0.076 0.924 14 C -0.059 4.059 15 N -0.942 5.942 16 Si 0.963 3.037 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.266 1.266 20 H 0.051 0.949 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.195 0.805 26 H 0.060 0.940 27 H 0.062 0.938 28 H -0.001 1.001 29 H 0.015 0.985 30 H 0.032 0.968 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 4.953 -3.031 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.085 4.085 4 N -0.163 5.163 5 N -0.188 5.188 6 H 0.292 0.708 7 C -0.087 4.087 8 C -0.267 4.267 9 C 0.092 3.908 10 N -0.330 5.330 11 C 0.037 3.963 12 C -0.377 4.377 13 H 0.094 0.906 14 C -0.253 4.253 15 N -0.590 5.590 16 Si 0.793 3.207 17 H -0.215 1.215 18 H -0.231 1.231 19 H -0.190 1.190 20 H 0.070 0.930 21 H 0.098 0.902 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.212 0.788 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.967 4.898 -4.281 11.079 hybrid contribution 1.570 0.518 0.786 1.831 sum -7.397 5.416 -3.495 9.812 Atomic orbital electron populations 1.21609 0.92339 1.02871 1.01907 1.20155 0.97577 0.88501 1.03083 1.22430 0.98232 0.97355 0.90528 1.77006 1.23396 0.92458 1.23489 1.46072 1.54407 1.12695 1.05648 0.70785 1.22697 1.00451 1.00381 0.85214 1.21319 1.12083 0.94494 0.98832 1.19314 0.89266 0.94464 0.87796 1.44288 1.15168 1.02544 1.71037 1.20553 0.94705 0.83238 0.97836 1.19584 0.86934 1.03521 1.27649 0.90628 1.25755 0.99718 0.99325 1.00511 1.70253 1.23379 1.23509 1.41853 0.85307 0.78898 0.78482 0.78025 1.21453 1.23063 1.19040 0.92982 0.90192 0.92289 0.91652 0.90085 0.78796 0.92196 0.91973 0.98319 0.96653 0.94947 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.90 71.98 0.71 -2.67 16 2 C -0.05 -1.85 6.31 29.85 0.19 -1.66 16 3 C 0.08 3.17 6.47 43.10 0.28 3.45 16 4 N -0.34 -13.08 12.70 -47.38 -0.60 -13.68 16 5 N -0.48 -15.41 7.36 -57.59 -0.42 -15.84 16 6 H 0.45 10.64 8.96 -213.32 -1.91 8.72 16 7 C 0.06 2.05 11.90 83.54 0.99 3.04 16 8 C -0.25 -9.91 5.68 -20.14 -0.11 -10.03 16 9 C 0.22 8.67 5.83 85.63 0.50 9.17 16 10 N -0.61 -30.02 2.91 -731.31 -2.13 -32.15 16 11 C 0.18 8.97 7.43 127.77 0.95 9.92 16 12 C -0.25 -13.27 9.67 84.03 0.81 -12.46 16 13 H 0.08 3.87 7.84 -2.91 -0.02 3.85 16 14 C -0.06 -3.32 5.12 84.86 0.43 -2.88 16 15 N -0.94 -56.88 10.59 21.65 0.23 -56.65 16 16 Si 0.96 45.35 29.57 68.60 2.03 47.38 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.08 3.00 4.59 -2.39 -0.01 2.99 16 25 H 0.20 5.28 8.06 -2.91 -0.02 5.25 16 26 H 0.06 2.21 8.03 -2.39 -0.02 2.19 16 27 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 28 H 0.00 -0.08 6.97 -2.39 -0.02 -0.10 16 29 H 0.01 0.81 7.15 -2.39 -0.02 0.79 16 30 H 0.03 1.34 7.03 -2.38 -0.02 1.32 16 31 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -68.19 260.12 3.07 -65.11 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -0.79 Total: 9.94 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.75 Total: -4.12 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -2.92 Total: -118.32 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.19 3.07 -65.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237650708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.467 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds