Wall clock time and date at job start Mon Mar 30 2020 17:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46904 * 110.99680 * 293.95507 * 7 6 5 9 9 C 1.46900 * 110.99976 * 170.00197 * 7 6 5 10 10 C 1.50701 * 109.46869 * 190.00123 * 9 7 6 11 11 H 1.08005 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.37873 * 119.99776 * 180.02562 * 10 9 7 13 13 N 1.31518 * 120.00056 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00209 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47050 * 89.99966 * 14 12 10 16 16 H 1.48493 * 109.47174 * 210.00232 * 14 12 10 17 17 H 1.48503 * 109.46822 * 330.00257 * 14 12 10 18 18 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 19 19 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 20 20 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 21 21 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 22 22 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 23 23 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 24 24 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 25 25 H 1.08999 * 109.47244 * 60.00111 * 8 7 6 26 26 H 1.09001 * 109.46694 * 179.97438 * 8 7 6 27 27 H 1.08995 * 109.47480 * 299.99766 * 8 7 6 28 28 H 1.09000 * 109.47142 * 309.99811 * 9 7 6 29 29 H 1.08998 * 109.46841 * 70.00023 * 9 7 6 30 30 H 0.97001 * 120.00016 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 5.6382 -0.6200 2.0679 9 6 6.2286 -2.8802 1.4312 10 6 6.4348 -3.3216 2.8573 11 1 5.8534 -2.8747 3.6503 12 6 7.3663 -4.2950 3.1499 13 7 7.5466 -4.6798 4.3945 14 14 8.3724 -5.0673 1.7784 15 1 9.6188 -4.2853 1.5782 16 1 8.7179 -6.4644 2.1445 17 1 7.5801 -5.0662 0.5224 18 8 2.2872 -1.0891 0.0005 19 1 -0.3634 0.0005 1.0276 20 1 -0.3633 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 4.4157 1.3161 0.0011 23 1 4.5695 -2.4896 -0.5140 24 1 5.6081 -1.0440 -0.5130 25 1 4.8264 0.1073 2.0804 26 1 5.9260 -0.8604 3.0914 27 1 6.4936 -0.2004 1.5386 28 1 5.9160 -3.7330 0.8286 29 1 7.1620 -2.4790 1.0365 30 1 8.2017 -5.3649 4.6003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701864708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:04:11 Heat of formation + Delta-G solvation = 3.179829 kcal Electronic energy + Delta-G solvation = -13586.969862 eV Core-core repulsion = 11190.273208 eV Total energy + Delta-G solvation = -2396.696654 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.29692 -38.54096 -35.73896 -34.79502 -33.20503 -30.75620 -29.25585 -27.48134 -25.04761 -23.26079 -22.37516 -21.71272 -19.05074 -17.91114 -17.76114 -16.65395 -16.22542 -16.03669 -15.64472 -14.92819 -14.58146 -14.27902 -13.90230 -13.77373 -13.53291 -13.23647 -13.06328 -12.68397 -12.59085 -12.30724 -12.14543 -11.79921 -11.55662 -11.48689 -10.79741 -9.71876 -9.13590 -8.28578 -6.33386 0.44524 1.36536 1.38883 1.49398 1.65054 1.75406 2.35045 3.04350 3.17081 3.27159 3.83559 4.02977 4.13004 4.34322 4.47216 4.58199 4.65324 4.67378 4.70175 4.83642 4.96227 5.03867 5.08903 5.14494 5.42161 5.49860 5.89494 6.21760 6.55610 6.72511 6.73535 7.30139 8.88201 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058747 B = 0.006573 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.505199 B = 4258.957283 C = 4277.130901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.179 3.821 3 N -0.513 5.513 4 C -0.043 4.043 5 C -0.037 4.037 6 C 0.133 3.867 7 N -0.553 5.553 8 C 0.039 3.961 9 C 0.173 3.827 10 C -0.521 4.521 11 H 0.034 0.966 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.951 3.049 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.244 1.244 18 O -0.212 6.212 19 H 0.104 0.896 20 H 0.115 0.885 21 H 0.105 0.895 22 H 0.199 0.801 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.001 0.999 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 8.323 -12.730 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.027 4.027 3 N -0.243 5.243 4 C -0.181 4.181 5 C -0.091 4.091 6 C 0.005 3.995 7 N -0.277 5.277 8 C -0.109 4.109 9 C 0.046 3.954 10 C -0.559 4.559 11 H 0.052 0.948 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.773 3.227 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.168 1.168 18 O -0.099 6.099 19 H 0.123 0.877 20 H 0.134 0.866 21 H 0.124 0.876 22 H 0.215 0.785 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.783 8.591 -12.376 17.964 hybrid contribution 1.632 -0.859 -0.164 1.851 sum -8.151 7.732 -12.540 16.837 Atomic orbital electron populations 1.20523 0.78118 1.06553 1.05947 1.27356 0.98184 0.78129 0.99065 1.70427 1.02495 1.31125 1.20282 1.23322 0.95545 0.92977 1.06301 1.23472 0.83559 0.95400 1.06649 1.20524 0.89621 0.98456 0.90860 1.61773 1.42096 1.09937 1.13939 1.22228 0.98524 0.90870 0.99249 1.19990 0.88715 0.90677 0.96007 1.21243 1.20515 1.21276 0.92906 0.94807 1.25887 0.98089 0.96847 0.98174 1.70060 1.36374 1.31998 1.20565 0.85666 0.79313 0.77763 0.79909 1.18993 1.20904 1.16752 1.84408 1.17177 1.38563 1.69796 0.87726 0.86629 0.87601 0.78461 0.88891 0.89305 0.91667 0.93176 0.94523 0.94594 0.98172 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.18 4.88 8.34 88.34 0.74 5.62 16 3 N -0.51 -15.52 11.29 -303.83 -3.43 -18.95 16 4 C -0.04 -1.26 10.44 83.39 0.87 -0.39 16 5 C -0.04 -1.19 6.27 24.79 0.16 -1.04 16 6 C 0.13 4.27 5.51 85.56 0.47 4.74 16 7 N -0.55 -22.81 4.74 -931.62 -4.42 -27.23 16 8 C 0.04 1.50 9.10 127.69 1.16 2.66 16 9 C 0.17 8.03 3.79 85.56 0.32 8.35 16 10 C -0.52 -30.06 9.01 25.60 0.23 -29.83 16 11 H 0.03 2.21 7.37 -2.91 -0.02 2.18 16 12 C 0.01 0.42 5.47 84.65 0.46 0.88 16 13 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 14 Si 0.95 42.92 27.47 68.60 1.88 44.81 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 18 O -0.21 -6.86 10.78 -3.79 -0.04 -6.90 16 19 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.20 4.77 8.06 -2.91 -0.02 4.74 16 23 H 0.09 2.87 7.93 -2.39 -0.02 2.85 16 24 H 0.09 2.38 8.12 -2.39 -0.02 2.36 16 25 H 0.06 2.25 6.33 -2.39 -0.02 2.24 16 26 H 0.05 2.22 6.76 -2.39 -0.02 2.21 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.64 6.99 -2.39 -0.02 1.62 16 29 H 0.00 0.03 7.55 -2.39 -0.02 0.01 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -70.94 257.42 0.52 -70.42 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.07 Total: 5.98 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.16 Total: -9.08 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -7.55 Total: -105.23 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.04 Total: -6.90 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.81 kcal Total: -70.94 0.52 -70.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701864708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.603 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds