Wall clock time and date at job start Mon Mar 30 2020 17:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46894 * 109.47131 * 2 1 4 4 C 1.46898 * 110.99994 * 297.97971 * 3 2 1 5 5 C 1.50700 * 109.47036 * 292.93290 * 4 3 2 6 6 H 1.07994 * 120.00226 * 354.96510 * 5 4 3 7 7 C 1.37882 * 119.99774 * 174.96162 * 5 4 3 8 8 N 1.31511 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46921 * 60.00326 * 9 7 5 11 11 H 1.48502 * 109.46818 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47188 * 300.00120 * 9 7 5 13 13 C 1.46904 * 111.00217 * 61.93306 * 3 2 1 14 14 C 1.50696 * 109.47101 * 66.04753 * 13 3 2 15 15 C 1.40896 * 125.30937 * 95.00312 * 14 13 3 16 16 N 1.29941 * 109.39689 * 180.02562 * 15 14 13 17 17 O 1.41874 * 107.41494 * 0.02562 * 16 15 14 18 18 N 1.29958 * 125.30238 * 275.02940 * 14 13 3 19 19 H 1.08997 * 109.47886 * 299.66774 * 1 2 3 20 20 H 1.08998 * 109.46851 * 59.67530 * 1 2 3 21 21 H 1.09003 * 109.46893 * 179.66877 * 1 2 3 22 22 H 1.08994 * 109.47543 * 239.99658 * 2 1 3 23 23 H 1.08999 * 109.47343 * 119.99945 * 2 1 3 24 24 H 1.08997 * 109.47116 * 52.93642 * 4 3 2 25 25 H 1.09004 * 109.47438 * 172.93322 * 4 3 2 26 26 H 0.97003 * 120.00056 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.46837 * 306.04697 * 13 3 2 28 28 H 1.09004 * 109.47387 * 186.04992 * 13 3 2 29 29 H 1.08000 * 125.29838 * 0.03875 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5885 2.0957 -1.2111 5 6 2.2705 1.4973 -2.4144 6 1 3.0161 0.7269 -2.2849 7 6 1.9425 1.9335 -3.6806 8 7 1.0348 2.8720 -3.8382 9 14 2.7884 1.1922 -5.1720 10 1 2.5240 -0.2684 -5.2160 11 1 2.2624 1.8284 -6.4065 12 1 4.2516 1.4278 -5.0792 13 6 1.5867 2.0964 1.2102 14 6 2.2477 1.4825 2.4173 15 6 3.4371 1.9424 3.0166 16 7 3.7276 1.1877 4.0337 17 8 2.7180 0.1955 4.1283 18 7 1.8098 0.4460 3.0675 19 1 -0.3635 0.5086 0.8929 20 1 -0.3633 0.5189 -0.8871 21 1 -0.3633 -1.0277 -0.0059 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 0.5082 2.0025 -1.3220 25 1 1.8556 3.1493 -1.1286 26 1 0.8038 3.1786 -4.7291 27 1 0.5041 2.0185 1.3097 28 1 1.8701 3.1463 1.1354 29 1 4.0167 2.7903 2.6827 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851796708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:02:33 Heat of formation + Delta-G solvation = 98.323041 kcal Electronic energy + Delta-G solvation = -13902.332695 eV Core-core repulsion = 11444.335849 eV Total energy + Delta-G solvation = -2457.996846 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.23293 -37.50338 -33.50369 -32.71141 -32.25579 -29.73123 -27.94728 -25.35268 -23.34702 -23.14493 -21.13364 -19.42956 -16.97814 -16.30188 -15.95587 -15.23991 -14.86479 -14.58189 -14.35425 -13.94982 -13.07478 -12.54209 -12.10499 -11.95143 -11.61207 -11.49996 -11.22226 -11.20111 -10.99304 -10.82829 -10.71031 -10.43033 -10.13935 -9.91157 -9.35797 -8.51472 -7.46365 -6.11360 -4.12907 0.67946 2.16622 2.86075 3.29183 3.33648 3.35583 3.37015 4.16117 4.36646 4.85900 5.01840 5.24876 5.28127 5.51286 5.66604 5.73375 5.83648 5.95659 6.08191 6.37918 6.58798 6.82009 7.06634 7.11779 7.28401 7.66321 7.88446 8.00855 8.37174 8.94103 9.51728 10.99145 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.051188 B = 0.007289 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.876408 B = 3840.361080 C = 3948.878362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 N -0.529 5.529 4 C 0.190 3.810 5 C -0.509 4.509 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.105 3.895 14 C 0.095 3.905 15 C 0.068 3.932 16 N -0.287 5.287 17 O 0.010 5.990 18 N -0.274 5.274 19 H 0.045 0.955 20 H 0.070 0.930 21 H 0.050 0.950 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.009 0.991 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -0.264 8.984 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.073 4.073 3 N -0.254 5.254 4 C 0.066 3.934 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.024 4.024 14 C -0.088 4.088 15 C -0.135 4.135 16 N -0.030 5.030 17 O -0.130 6.130 18 N -0.020 5.020 19 H 0.064 0.936 20 H 0.089 0.911 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.471 -1.230 9.842 10.027 hybrid contribution -0.381 0.298 -1.455 1.533 sum 1.090 -0.932 8.387 8.509 Atomic orbital electron populations 1.22339 0.98831 1.01445 1.01864 1.22050 0.92697 0.90747 1.01781 1.62452 1.59190 1.02383 1.01377 1.19849 0.95230 0.93705 0.84657 1.21049 1.22180 1.21640 0.89875 0.91888 1.24953 0.95204 0.95166 0.99038 1.69931 1.31808 1.28965 1.23003 0.86558 0.79861 0.79304 0.81699 1.20256 1.21352 1.20136 1.20847 0.97450 0.98193 0.85937 1.24874 0.93667 0.92429 0.97868 1.26061 0.95463 1.00399 0.91592 1.79839 1.07969 0.99034 1.16206 1.93357 1.29271 1.45786 1.44551 1.79980 1.10809 1.13336 0.97869 0.93619 0.91134 0.93122 0.89590 0.92852 0.97329 0.95228 0.92767 0.92099 0.87917 0.77090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.26 37.16 0.34 -2.95 15 2 C 0.06 1.05 5.69 -3.83 -0.02 1.03 15 3 N -0.53 -10.28 4.69 -237.53 -1.11 -11.39 15 4 C 0.19 4.45 4.53 -4.98 -0.02 4.43 15 5 C -0.51 -13.36 8.40 -34.44 -0.29 -13.65 15 6 H 0.06 1.66 7.38 -52.49 -0.39 1.27 15 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 15 8 N -0.90 -25.24 13.29 55.43 0.74 -24.51 15 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 13 C 0.11 1.63 5.30 -4.98 -0.03 1.60 15 14 C 0.09 1.39 5.96 -82.38 -0.49 0.90 15 15 C 0.07 0.85 11.90 -17.35 -0.21 0.65 15 16 N -0.29 -4.24 12.98 30.69 0.40 -3.84 15 17 O 0.01 0.16 13.71 12.02 0.16 0.32 15 18 N -0.27 -4.50 11.86 33.74 0.40 -4.10 15 19 H 0.04 0.76 6.34 -51.93 -0.33 0.43 15 20 H 0.07 1.40 6.28 -51.93 -0.33 1.07 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.09 1.78 6.98 -51.93 -0.36 1.41 15 23 H 0.05 0.98 6.41 -51.93 -0.33 0.64 15 24 H 0.01 0.22 6.01 -51.93 -0.31 -0.09 15 25 H 0.03 0.72 7.91 -51.93 -0.41 0.31 15 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 27 H 0.06 0.95 6.07 -51.93 -0.32 0.63 15 28 H 0.10 1.37 7.92 -51.93 -0.41 0.96 15 29 H 0.21 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 249.67 15.07 3.76 3.76 Total: -1.00 -28.86 249.67 -4.65 -33.51 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -3.17 Total: -3.04 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.81 Total: -6.52 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.42 Total: -43.84 kcal Atomic # 8 Polarization: 0.16 SS G_CDS: 0.16 Total: 0.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.86 -4.65 -33.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851796708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.833 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds