Wall clock time and date at job start Mon Mar 30 2020 17:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46948 * 2 1 4 4 H 1.08997 * 109.47236 * 54.79869 * 3 2 1 5 5 C 1.50707 * 109.47105 * 174.79568 * 3 2 1 6 6 H 1.08006 * 120.00010 * 119.99699 * 5 3 2 7 7 C 1.37873 * 120.00284 * 300.00363 * 5 3 2 8 8 N 1.31513 * 120.00353 * 179.97438 * 7 5 3 9 9 Si 1.86808 * 119.99650 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46931 * 90.00247 * 9 7 5 11 11 H 1.48506 * 109.46670 * 209.99979 * 9 7 5 12 12 H 1.48495 * 109.46995 * 330.00165 * 9 7 5 13 13 N 1.46901 * 109.47193 * 294.79768 * 3 2 1 14 14 C 1.46906 * 110.99868 * 153.75759 * 13 3 2 15 15 C 1.50695 * 109.46791 * 175.82116 * 14 13 3 16 16 C 1.40898 * 125.30205 * 95.00047 * 15 14 13 17 17 N 1.29956 * 109.39184 * 179.97438 * 16 15 14 18 18 O 1.41874 * 107.41188 * 0.02562 * 17 16 15 19 19 N 1.29951 * 125.30843 * 274.69093 * 15 14 13 20 20 H 1.09003 * 109.47198 * 186.19657 * 1 2 3 21 21 H 1.08996 * 109.47679 * 306.19717 * 1 2 3 22 22 H 1.09003 * 109.47494 * 66.20193 * 1 2 3 23 23 H 1.09005 * 109.47245 * 240.00119 * 2 1 3 24 24 H 1.09003 * 109.47378 * 120.00087 * 2 1 3 25 25 H 0.96998 * 119.99970 * 179.97438 * 8 7 5 26 26 H 1.00898 * 110.99920 * 29.80282 * 13 3 2 27 27 H 1.08991 * 109.46911 * 295.82494 * 14 13 3 28 28 H 1.09002 * 109.46688 * 55.82177 * 14 13 3 29 29 H 1.08004 * 125.30412 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6025 1.9825 0.8397 5 6 3.5414 1.4445 0.1289 6 1 4.1494 1.8882 -0.6458 7 6 4.1392 0.8799 1.2356 8 7 5.4495 0.8812 1.3479 9 14 3.0876 0.1131 2.5758 10 1 2.8669 -1.3233 2.2705 11 1 3.7812 0.2405 3.8827 12 1 1.7792 0.8124 2.6393 13 7 1.6554 2.0978 -1.2573 14 6 1.5473 3.5523 -1.0812 15 6 1.2531 4.1986 -2.4104 16 6 -0.0302 4.5305 -2.8880 17 7 0.0741 5.0723 -4.0646 18 8 1.4535 5.1093 -4.3942 19 7 2.1437 4.5417 -3.2923 20 1 -0.3634 -1.0217 0.1109 21 1 -0.3634 0.6069 0.8293 22 1 -0.3634 0.4147 -0.9403 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 5.8699 0.4843 2.1267 26 1 0.7955 1.7123 -1.6177 27 1 0.7409 3.7747 -0.3826 28 1 2.4865 3.9414 -0.6880 29 1 -0.9563 4.3611 -2.3588 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852156359.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:02:38 Heat of formation + Delta-G solvation = 97.302782 kcal Electronic energy + Delta-G solvation = -13782.909077 eV Core-core repulsion = 11324.867990 eV Total energy + Delta-G solvation = -2458.041087 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 211.106 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.23403 -37.01188 -34.02882 -32.68117 -32.13881 -31.21930 -27.70374 -25.56492 -23.30483 -22.53760 -20.78305 -20.04572 -17.11493 -16.80898 -15.91496 -15.46393 -15.02812 -14.71110 -14.12568 -13.44565 -13.15874 -13.04541 -12.60713 -12.11667 -11.95042 -11.63994 -11.53044 -11.10303 -11.03931 -10.72586 -10.54827 -10.37844 -10.14606 -9.54867 -9.31463 -8.60373 -7.68091 -6.10469 -4.09371 0.65676 2.10820 2.81890 3.19714 3.27884 3.31233 3.32747 4.05690 4.33048 4.81922 5.05068 5.15551 5.22274 5.44837 5.61284 5.69609 5.71381 5.83877 6.07762 6.33868 6.45231 6.54320 6.63819 6.98155 7.07343 7.57964 7.66713 8.00186 8.61611 9.02713 9.50582 11.02719 Molecular weight = 211.11amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.008201 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.489038 B = 3413.414176 C = 3861.553031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.137 4.137 3 C 0.193 3.807 4 H 0.007 0.993 5 C -0.503 4.503 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.267 1.267 13 N -0.668 5.668 14 C 0.125 3.875 15 C 0.080 3.920 16 C 0.053 3.947 17 N -0.285 5.285 18 O 0.013 5.987 19 N -0.246 5.246 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.264 0.736 26 H 0.323 0.677 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.927 3.336 -2.295 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.085 3.915 4 H 0.025 0.975 5 C -0.542 4.542 6 H 0.101 0.899 7 C -0.133 4.133 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.193 1.193 13 N -0.300 5.300 14 C -0.005 4.005 15 C -0.104 4.104 16 C -0.150 4.150 17 N -0.028 5.028 18 O -0.127 6.127 19 N 0.009 4.991 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.128 0.872 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.521 3.853 -3.645 12.684 hybrid contribution -1.652 -0.823 1.974 2.703 sum -13.173 3.031 -1.670 13.620 Atomic orbital electron populations 1.21927 0.98070 1.00874 1.00679 1.22141 0.93028 1.00133 1.02190 1.19664 0.97258 0.89389 0.85184 0.97547 1.21021 0.88823 1.38023 1.06307 0.89896 1.24962 0.94762 0.95847 0.97732 1.69882 1.08724 1.45329 1.29552 0.86956 0.80598 0.79865 0.81373 1.20519 1.22397 1.19252 1.60454 1.36773 1.00074 1.32732 1.20560 1.03502 0.90297 0.86166 1.24937 0.89345 0.96937 0.99175 1.26083 1.00486 0.95497 0.92923 1.79815 0.96516 1.13376 1.13124 1.93389 1.10474 1.73072 1.35815 1.80116 1.16987 1.07346 0.94657 0.93429 0.93410 0.93181 0.91129 0.92480 0.92581 0.85914 0.92676 0.87238 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.63 37.15 0.36 -2.01 15 2 C -0.14 -2.69 5.01 -26.73 -0.13 -2.82 15 3 C 0.19 4.11 1.62 -68.86 -0.11 3.99 15 4 H 0.01 0.15 6.89 -51.93 -0.36 -0.21 15 5 C -0.50 -13.51 9.19 -34.44 -0.32 -13.82 15 6 H 0.08 2.52 8.06 -52.48 -0.42 2.09 15 7 C 0.07 1.91 5.45 -17.82 -0.10 1.81 15 8 N -0.90 -26.84 13.96 55.43 0.77 -26.06 15 9 Si 0.88 20.74 24.41 -169.99 -4.15 16.59 15 10 H -0.28 -6.41 6.83 56.52 0.39 -6.02 15 11 H -0.30 -7.09 7.11 56.52 0.40 -6.68 15 12 H -0.27 -5.88 6.53 56.52 0.37 -5.51 15 13 N -0.67 -12.11 6.26 -109.22 -0.68 -12.79 15 14 C 0.13 1.94 6.00 -4.98 -0.03 1.91 15 15 C 0.08 1.16 6.74 -82.38 -0.55 0.61 15 16 C 0.05 0.61 11.90 -17.34 -0.21 0.40 15 17 N -0.29 -4.05 12.98 30.70 0.40 -3.65 15 18 O 0.01 0.22 13.71 12.03 0.16 0.39 15 19 N -0.25 -4.33 12.98 33.74 0.44 -3.90 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.05 0.64 6.65 -51.93 -0.35 0.29 15 23 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 24 H 0.06 1.22 3.22 -51.93 -0.17 1.05 15 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 26 H 0.32 4.95 6.61 -39.29 -0.26 4.69 15 27 H 0.06 0.68 8.13 -51.93 -0.42 0.25 15 28 H 0.11 1.97 7.98 -51.93 -0.41 1.55 15 29 H 0.21 1.32 8.06 -52.48 -0.42 0.90 15 LS Contribution 248.64 15.07 3.75 3.75 Total: -1.00 -30.94 248.64 -3.67 -34.61 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.26 Total: 0.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.09 Total: -9.92 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.93 Total: -46.40 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: 0.16 Total: 0.39 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.15 Total: 16.59 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.94 -3.67 -34.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852156359.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.915 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds