Wall clock time and date at job start Mon Mar 30 2020 17:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99824 * 2 1 4 4 C 1.50702 * 109.47154 * 270.00166 * 3 2 1 5 5 H 1.07996 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99557 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00298 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99509 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47170 * 120.00010 * 8 6 4 11 11 H 1.48496 * 109.46763 * 239.99870 * 8 6 4 12 12 C 1.39184 * 120.00461 * 180.02562 * 2 1 3 13 13 C 1.39508 * 120.12907 * 4.99751 * 12 2 1 14 14 C 1.38489 * 117.92835 * 179.97438 * 13 12 2 15 15 C 1.39091 * 118.00598 * 0.02562 * 14 13 12 16 16 F 1.35105 * 120.02364 * 180.02562 * 15 14 13 17 17 N 1.31937 * 119.95680 * 359.97438 * 15 14 13 18 18 N 1.28354 * 122.25135 * 359.97438 * 17 15 14 19 19 H 1.08998 * 109.47395 * 269.99432 * 1 2 3 20 20 H 1.08992 * 109.47372 * 29.99810 * 1 2 3 21 21 H 1.09007 * 109.46952 * 149.99885 * 1 2 3 22 22 H 1.09002 * 109.46947 * 30.00482 * 3 2 1 23 23 H 1.08998 * 109.47167 * 150.00288 * 3 2 1 24 24 H 0.96997 * 119.99921 * 180.02562 * 7 6 4 25 25 H 1.08004 * 121.03821 * 0.02914 * 13 12 2 26 26 H 1.08000 * 121.00191 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8782 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4365 3.4178 -3.4339 9 1 2.8597 2.4172 -4.3673 10 1 2.7984 4.7383 -3.6669 11 1 4.8989 3.5266 -3.6675 12 6 2.1610 -1.2053 -0.0005 13 6 1.4702 -2.4128 -0.1062 14 6 2.2082 -3.5847 -0.1026 15 6 3.5912 -3.4852 0.0065 16 9 4.3508 -4.6025 0.0137 17 7 4.1610 -2.2991 0.1021 18 7 3.4811 -1.2104 0.0982 19 1 -0.3634 -0.0001 1.0276 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6083 2.0284 0.5139 23 1 3.1499 1.1385 0.5138 24 1 4.0293 4.4445 -0.8503 25 1 0.3936 -2.4330 -0.1891 26 1 1.7244 -4.5469 -0.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865399777.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:02:44 Heat of formation + Delta-G solvation = 29.694021 kcal Electronic energy + Delta-G solvation = -13461.187324 eV Core-core repulsion = 10876.754195 eV Total energy + Delta-G solvation = -2584.433128 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.58568 -40.41227 -36.47539 -33.05106 -32.47652 -30.51243 -28.13877 -25.69522 -24.37884 -23.12261 -21.24076 -17.88872 -17.40021 -16.73586 -16.42146 -15.84172 -14.74210 -14.33690 -14.14210 -13.77863 -13.66948 -13.07216 -12.90083 -12.20788 -11.83061 -11.29225 -11.17821 -10.87687 -10.65872 -10.31381 -10.13194 -9.95407 -9.35423 -9.02392 -8.48517 -7.11964 -6.08259 -4.15508 1.10461 1.49379 3.27007 3.35039 3.36975 3.46928 3.97879 4.01527 4.39767 4.73175 4.84735 5.02859 5.24704 5.36059 5.49495 5.76335 5.83805 5.99152 6.11884 6.50642 6.90273 7.34145 7.69744 7.89388 7.98768 8.14555 8.87346 9.26359 9.49860 10.97995 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.008710 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.964733 B = 3213.743836 C = 3589.435028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.576 5.576 3 C 0.247 3.753 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.281 1.281 12 C 0.347 3.653 13 C -0.171 4.171 14 C -0.103 4.103 15 C 0.158 3.842 16 F -0.119 7.119 17 N -0.218 5.218 18 N -0.254 5.254 19 H 0.048 0.952 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.264 0.736 25 H 0.150 0.850 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 -10.653 1.381 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.284 5.284 3 C 0.128 3.872 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.103 3.897 13 C -0.206 4.206 14 C -0.133 4.133 15 C -0.008 4.008 16 F -0.099 7.099 17 N -0.066 5.066 18 N -0.108 5.108 19 H 0.067 0.933 20 H 0.099 0.901 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.168 0.832 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.778 -9.406 1.571 11.150 hybrid contribution -0.980 -0.698 -1.180 1.685 sum -6.758 -10.103 0.390 12.161 Atomic orbital electron populations 1.21703 0.79731 1.02926 1.00761 1.47130 1.04897 1.04051 1.72356 1.19496 0.92735 0.77235 0.97759 1.21438 1.36952 1.06459 0.92083 0.92488 1.24911 0.95180 0.96299 0.97437 1.69929 1.38098 1.14286 1.30686 0.86448 0.78215 0.78297 0.84495 1.19896 1.20929 1.20731 1.20188 0.91098 0.87567 0.90812 1.21803 1.01908 0.90821 1.06045 1.21867 0.92450 1.00368 0.98580 1.19617 0.87602 0.84577 1.08994 1.91549 1.76380 1.47461 1.94508 1.72779 1.31807 0.94116 1.07944 1.73302 1.04241 1.15193 1.18102 0.93340 0.90055 0.92295 0.94716 0.92859 0.92631 0.83206 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.30 59.84 0.62 1.98 15 2 N -0.58 -11.65 2.98 -182.93 -0.54 -12.20 15 3 C 0.25 6.17 5.23 -5.19 -0.03 6.14 15 4 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 15 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 15 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 7 N -0.89 -25.92 13.29 55.43 0.74 -25.18 15 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 15 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 C 0.35 6.87 7.45 -154.71 -1.15 5.72 15 13 C -0.17 -2.56 9.35 -39.02 -0.36 -2.93 15 14 C -0.10 -1.45 10.19 -39.17 -0.40 -1.84 15 15 C 0.16 2.75 8.52 -17.19 -0.15 2.61 15 16 F -0.12 -1.95 17.30 2.25 0.04 -1.91 15 17 N -0.22 -4.64 11.50 30.28 0.35 -4.29 15 18 N -0.25 -5.80 10.26 31.25 0.32 -5.48 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 20 H 0.08 1.23 8.07 -51.93 -0.42 0.81 15 21 H 0.06 0.69 6.03 -51.92 -0.31 0.38 15 22 H 0.03 0.88 8.07 -51.93 -0.42 0.46 15 23 H 0.05 1.48 7.33 -51.93 -0.38 1.10 15 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 25 H 0.15 1.67 6.14 -52.48 -0.32 1.35 15 26 H 0.15 1.46 8.06 -52.49 -0.42 1.03 15 LS Contribution 240.03 15.07 3.62 3.62 Total: -1.00 -31.08 240.03 -4.64 -35.73 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: -2.24 Total: -5.32 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.89 Total: -1.49 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.86 Total: -47.15 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.08 -4.64 -35.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865399777.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.420 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds