Wall clock time and date at job start Mon Mar 30 2020 17:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 119.99824 * 2 1 4 4 C 1.50702 * 109.47154 * 270.00166 * 3 2 1 5 5 H 1.07996 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99557 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00298 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99509 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47142 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47170 * 120.00010 * 8 6 4 11 11 H 1.48496 * 109.46763 * 239.99870 * 8 6 4 12 12 C 1.39184 * 120.00461 * 180.02562 * 2 1 3 13 13 C 1.39508 * 120.12907 * 4.99751 * 12 2 1 14 14 C 1.38489 * 117.92835 * 179.97438 * 13 12 2 15 15 C 1.39091 * 118.00598 * 0.02562 * 14 13 12 16 16 F 1.35105 * 120.02364 * 180.02562 * 15 14 13 17 17 N 1.31937 * 119.95680 * 359.97438 * 15 14 13 18 18 N 1.28354 * 122.25135 * 359.97438 * 17 15 14 19 19 H 1.08998 * 109.47395 * 269.99432 * 1 2 3 20 20 H 1.08992 * 109.47372 * 29.99810 * 1 2 3 21 21 H 1.09007 * 109.46952 * 149.99885 * 1 2 3 22 22 H 1.09002 * 109.46947 * 30.00482 * 3 2 1 23 23 H 1.08998 * 109.47167 * 150.00288 * 3 2 1 24 24 H 0.96997 * 119.99921 * 180.02562 * 7 6 4 25 25 H 1.08004 * 121.03821 * 0.02914 * 13 12 2 26 26 H 1.08000 * 121.00191 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8782 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4365 3.4178 -3.4339 9 1 2.8597 2.4172 -4.3673 10 1 2.7984 4.7383 -3.6669 11 1 4.8989 3.5266 -3.6675 12 6 2.1610 -1.2053 -0.0005 13 6 1.4702 -2.4128 -0.1062 14 6 2.2082 -3.5847 -0.1026 15 6 3.5912 -3.4852 0.0065 16 9 4.3508 -4.6025 0.0137 17 7 4.1610 -2.2991 0.1021 18 7 3.4811 -1.2104 0.0982 19 1 -0.3634 -0.0001 1.0276 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6083 2.0284 0.5139 23 1 3.1499 1.1385 0.5138 24 1 4.0293 4.4445 -0.8503 25 1 0.3936 -2.4330 -0.1891 26 1 1.7244 -4.5469 -0.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865399777.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:02:44 Heat of formation + Delta-G solvation = 8.734145 kcal Electronic energy + Delta-G solvation = -13462.096212 eV Core-core repulsion = 10876.754195 eV Total energy + Delta-G solvation = -2585.342017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.082 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.92025 -41.81566 -37.99358 -34.91862 -33.96852 -31.98456 -29.88488 -27.19228 -25.88659 -24.73595 -22.80033 -19.29079 -18.76340 -18.59545 -18.02778 -17.24302 -16.59957 -15.80291 -15.46596 -15.17560 -15.00368 -14.52365 -14.34532 -13.88931 -13.32886 -13.06665 -12.86693 -12.59637 -12.46165 -12.05908 -11.89077 -11.36628 -11.04935 -10.63654 -10.37260 -8.71294 -8.14314 -6.34690 -0.13618 0.14285 1.36443 1.39536 1.49861 2.02741 2.38813 2.59505 2.68696 3.09776 3.44165 3.71851 3.79145 4.18460 4.36765 4.63300 4.70090 4.77599 4.95504 5.06869 5.21820 5.36900 5.66295 6.04880 6.18933 6.43027 6.76849 7.34677 7.86005 8.86188 Molecular weight = 211.08amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.008710 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.964733 B = 3213.743836 C = 3589.435028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.590 5.590 3 C 0.264 3.736 4 C -0.538 4.538 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.270 1.270 11 H -0.284 1.284 12 C 0.325 3.675 13 C -0.148 4.148 14 C -0.082 4.082 15 C 0.161 3.839 16 F -0.114 7.114 17 N -0.270 5.270 18 N -0.319 5.319 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.097 0.903 22 H 0.023 0.977 23 H 0.013 0.987 24 H 0.266 0.734 25 H 0.200 0.800 26 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -12.677 0.388 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.300 5.300 3 C 0.143 3.857 4 C -0.577 4.577 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.195 1.195 11 H -0.210 1.210 12 C 0.081 3.919 13 C -0.181 4.181 14 C -0.110 4.110 15 C -0.007 4.007 16 F -0.094 7.094 17 N -0.116 5.116 18 N -0.171 5.171 19 H 0.089 0.911 20 H 0.089 0.911 21 H 0.116 0.884 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.216 0.784 26 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.944 -11.456 0.583 13.953 hybrid contribution -0.318 -0.235 -0.825 0.915 sum -8.261 -11.691 -0.242 14.318 Atomic orbital electron populations 1.21981 0.76393 1.04351 1.02644 1.46982 1.06661 1.02633 1.73773 1.18872 0.91457 0.79505 0.95915 1.21707 1.36580 1.06334 0.93044 0.93086 1.25770 0.95033 0.96539 1.01469 1.70043 1.39003 1.14811 1.32788 0.85440 0.77780 0.78363 0.79635 1.19329 1.19522 1.20991 1.20568 0.90881 0.89027 0.91385 1.22266 1.04022 0.88695 1.03085 1.22396 0.90437 1.02468 0.95742 1.20011 0.89380 0.83822 1.07467 1.91568 1.76683 1.46800 1.94329 1.72583 1.33174 0.95258 1.10559 1.73130 1.06483 1.16540 1.20964 0.91150 0.91071 0.88427 0.95943 0.96933 0.92459 0.78359 0.77498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.37 10.30 127.77 1.32 3.69 15 2 N -0.59 -23.64 2.98 -732.65 -2.18 -25.83 15 3 C 0.26 13.71 5.23 85.63 0.45 14.16 15 4 C -0.54 -30.17 9.39 25.60 0.24 -29.93 15 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 15 6 C 0.01 0.63 5.46 84.66 0.46 1.09 15 7 N -0.93 -55.47 13.29 21.45 0.28 -55.18 15 8 Si 0.96 44.67 29.54 68.60 2.03 46.70 15 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 12 C 0.33 12.60 7.45 133.10 0.99 13.59 15 13 C -0.15 -3.78 9.35 22.64 0.21 -3.57 15 14 C -0.08 -1.91 10.19 22.53 0.23 -1.68 15 15 C 0.16 5.33 8.52 84.88 0.72 6.05 15 16 F -0.11 -3.49 17.30 44.97 0.78 -2.71 15 17 N -0.27 -11.66 11.50 -58.10 -0.67 -12.33 15 18 N -0.32 -14.97 10.26 -55.05 -0.56 -15.53 15 19 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.07 2.05 8.07 -2.39 -0.02 2.03 15 21 H 0.10 1.82 6.03 -2.38 -0.01 1.81 15 22 H 0.02 1.20 8.07 -2.39 -0.02 1.18 15 23 H 0.01 0.75 7.33 -2.39 -0.02 0.73 15 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 25 H 0.20 3.06 6.14 -2.91 -0.02 3.05 15 26 H 0.21 2.49 8.06 -2.91 -0.02 2.46 15 Total: -1.00 -72.18 240.03 5.49 -66.69 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: 1.20 Total: -5.21 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 4.62 Total: 3.40 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.13 Total: -108.87 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.18 5.49 -66.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865399777.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.424 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds