Wall clock time and date at job start Mon Mar 30 2020 17:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47482 * 2 1 4 4 H 1.08999 * 109.47436 * 182.55060 * 3 2 1 5 5 C 1.50698 * 109.46978 * 62.54411 * 3 2 1 6 6 H 1.08005 * 119.99921 * 242.63991 * 5 3 2 7 7 C 1.37871 * 120.00246 * 62.64486 * 5 3 2 8 8 N 1.31511 * 120.00405 * 195.23522 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.23888 * 7 5 3 10 10 H 1.48496 * 109.47547 * 95.25372 * 9 7 5 11 11 H 1.48504 * 109.46977 * 215.25195 * 9 7 5 12 12 H 1.48505 * 109.47063 * 335.24937 * 9 7 5 13 13 N 1.46901 * 109.46645 * 302.54841 * 3 2 1 14 14 C 1.46957 * 110.99864 * 305.30105 * 13 3 2 15 15 C 1.53053 * 109.36523 * 176.81594 * 14 13 3 16 16 N 1.46958 * 109.36308 * 58.40078 * 15 14 13 17 17 C 1.46901 * 110.99639 * 176.81592 * 16 15 14 18 18 C 1.46957 * 110.88109 * 300.67989 * 16 15 14 19 19 C 1.46956 * 110.99986 * 181.50600 * 13 3 2 20 20 H 1.09006 * 109.47593 * 183.83974 * 1 2 3 21 21 H 1.08997 * 109.47452 * 303.84044 * 1 2 3 22 22 H 1.09003 * 109.47263 * 63.84340 * 1 2 3 23 23 H 1.08995 * 109.47530 * 239.99555 * 2 1 3 24 24 H 1.09004 * 109.46825 * 119.99966 * 2 1 3 25 25 H 0.96995 * 120.00262 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.48873 * 296.78152 * 14 13 3 27 27 H 1.08993 * 109.49029 * 56.84788 * 14 13 3 28 28 H 1.09006 * 109.48637 * 298.43442 * 15 14 13 29 29 H 1.08998 * 109.50850 * 178.37850 * 15 14 13 30 30 H 1.08998 * 109.47211 * 183.80228 * 17 16 15 31 31 H 1.09004 * 109.46865 * 303.79583 * 17 16 15 32 32 H 1.08995 * 109.47514 * 63.79845 * 17 16 15 33 33 H 1.09000 * 109.48873 * 299.35580 * 18 16 15 34 34 H 1.09000 * 109.50272 * 179.30186 * 18 16 15 35 35 H 1.08997 * 109.48692 * 303.15336 * 19 13 3 36 36 H 1.09006 * 109.49015 * 63.21807 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 -0.0457 5 6 1.5899 2.1344 1.2608 6 1 0.9310 2.9882 1.2024 7 6 2.0192 1.6777 2.4888 8 7 1.4102 2.0707 3.5862 9 14 3.4659 0.5007 2.5938 10 1 4.7115 1.2686 2.8465 11 1 3.2428 -0.4600 3.7040 12 1 3.5934 -0.2424 1.3144 13 7 1.5007 2.1524 -1.1675 14 6 1.8140 1.4349 -2.4112 15 6 1.1688 2.1624 -3.5931 16 7 1.6670 3.5440 -3.6457 17 6 1.1277 4.2539 -4.8132 18 6 1.3538 4.2615 -2.4020 19 6 1.9989 3.5340 -1.2202 20 1 -0.3634 -1.0254 0.0688 21 1 -0.3634 0.5723 0.8535 22 1 -0.3634 0.4530 -0.9224 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 1.7125 1.7496 4.4501 26 1 2.8946 1.4027 -2.5500 27 1 1.4240 0.4188 -2.3529 28 1 0.0860 2.1709 -3.4677 29 1 1.4236 1.6485 -4.5199 30 1 1.5644 5.2512 -4.8656 31 1 1.3738 3.7014 -5.7200 32 1 0.0448 4.3360 -4.7203 33 1 0.2731 4.2937 -2.2631 34 1 1.7434 5.2778 -2.4602 35 1 1.7438 4.0481 -0.2935 36 1 3.0817 3.5255 -1.3456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036986708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:07:12 Heat of formation + Delta-G solvation = 16.071744 kcal Electronic energy + Delta-G solvation = -15242.943028 eV Core-core repulsion = 12955.327025 eV Total energy + Delta-G solvation = -2287.616003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.86401 -35.97683 -32.67676 -31.52943 -30.37534 -28.05886 -26.20281 -23.67117 -23.11301 -22.24076 -19.88742 -18.81774 -16.44075 -15.86538 -14.81376 -14.61417 -14.50009 -14.15056 -13.73306 -13.34246 -13.13098 -12.54367 -12.13507 -12.09018 -11.82619 -11.52579 -11.13874 -10.92071 -10.78229 -10.51703 -10.43289 -10.08146 -10.05785 -9.85569 -9.25924 -8.94471 -8.42487 -8.11243 -7.26701 -6.07510 -3.99920 3.28365 3.38205 3.41249 4.21030 4.43775 4.79734 5.24622 5.27285 5.33445 5.55743 5.56711 5.77255 5.85742 5.88909 5.92484 6.03988 6.11146 6.24891 6.26283 6.39022 6.42483 6.60425 6.71957 6.80561 6.96778 7.10396 7.18396 7.27342 7.32943 7.52688 7.73227 8.00858 8.12740 8.69060 9.03135 9.58854 11.05252 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043345 B = 0.009569 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.819429 B = 2925.446290 C = 3120.715375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.117 4.117 3 C 0.190 3.810 4 H -0.008 1.008 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.859 3.141 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.254 1.254 13 N -0.521 5.521 14 C 0.050 3.950 15 C 0.060 3.940 16 N -0.547 5.547 17 C 0.027 3.973 18 C 0.058 3.942 19 C 0.066 3.934 20 H 0.020 0.980 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 0.304 -12.633 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C 0.083 3.917 4 H 0.009 0.991 5 C -0.540 4.540 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.686 3.314 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.179 1.179 13 N -0.246 5.246 14 C -0.079 4.079 15 C -0.068 4.068 16 N -0.272 5.272 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.062 4.062 20 H 0.040 0.960 21 H 0.090 0.910 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.120 0.284 -12.418 12.422 hybrid contribution 0.848 -0.649 0.212 1.089 sum 0.968 -0.365 -12.206 12.249 Atomic orbital electron populations 1.21492 0.95672 0.98290 1.02814 1.21949 0.97078 0.97795 0.98709 1.19625 0.91937 0.90870 0.89251 0.99072 1.20818 1.29827 1.15576 0.87799 0.90243 1.24837 0.96259 0.95814 0.95702 1.69962 1.39216 1.45730 0.98087 0.87296 0.84096 0.81701 0.78312 1.20955 1.21332 1.17883 1.62102 1.59409 1.01535 1.01531 1.22188 0.97757 0.97840 0.90117 1.22156 0.97662 0.88782 0.98181 1.62189 1.59252 1.02736 1.03030 1.22314 0.97258 0.99028 0.93591 1.22246 0.98906 0.96849 0.89043 1.22025 0.96354 0.90413 0.97428 0.96048 0.91013 0.93354 0.95306 0.92796 0.92770 0.95365 0.90389 0.94331 0.91372 0.91750 0.91912 0.95945 0.94272 0.91163 0.88869 0.95425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.41 37.15 0.35 -2.27 16 2 C -0.12 -2.57 4.41 -26.74 -0.12 -2.69 16 3 C 0.19 4.48 1.30 -68.87 -0.09 4.39 16 4 H -0.01 -0.20 6.90 -51.93 -0.36 -0.56 16 5 C -0.50 -13.65 7.09 -34.44 -0.24 -13.89 16 6 H 0.08 2.36 7.15 -52.48 -0.38 1.99 16 7 C 0.08 2.14 5.34 -17.82 -0.10 2.04 16 8 N -0.89 -26.70 13.96 55.43 0.77 -25.93 16 9 Si 0.86 21.14 25.74 -169.99 -4.38 16.76 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.95 5.37 56.52 0.30 -5.65 16 13 N -0.52 -10.82 3.81 -227.88 -0.87 -11.68 16 14 C 0.05 0.89 4.95 -3.77 -0.02 0.87 16 15 C 0.06 0.92 5.62 -3.77 -0.02 0.90 16 16 N -0.55 -8.37 4.97 -242.75 -1.21 -9.58 16 17 C 0.03 0.32 9.60 60.07 0.58 0.90 16 18 C 0.06 0.94 5.62 -3.77 -0.02 0.92 16 19 C 0.07 1.30 5.39 -3.77 -0.02 1.28 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 21 H 0.07 1.71 7.17 -51.93 -0.37 1.33 16 22 H 0.05 0.96 7.15 -51.93 -0.37 0.59 16 23 H 0.03 0.57 6.42 -51.93 -0.33 0.23 16 24 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.35 5.72 -51.93 -0.30 1.05 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.99 6.52 -51.93 -0.34 1.65 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -28.94 268.18 -7.48 -36.42 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.15 Total: -2.49 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 0.30 Total: -7.55 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.30 Total: -47.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.38 Total: 16.76 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.94 -7.48 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036986708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.495 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds