Wall clock time and date at job start Mon Mar 30 2020 17:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47482 * 2 1 4 4 H 1.08999 * 109.47436 * 182.55060 * 3 2 1 5 5 C 1.50698 * 109.46978 * 62.54411 * 3 2 1 6 6 H 1.08005 * 119.99921 * 242.63991 * 5 3 2 7 7 C 1.37871 * 120.00246 * 62.64486 * 5 3 2 8 8 N 1.31511 * 120.00405 * 195.23522 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.23888 * 7 5 3 10 10 H 1.48496 * 109.47547 * 95.25372 * 9 7 5 11 11 H 1.48504 * 109.46977 * 215.25195 * 9 7 5 12 12 H 1.48505 * 109.47063 * 335.24937 * 9 7 5 13 13 N 1.46901 * 109.46645 * 302.54841 * 3 2 1 14 14 C 1.46957 * 110.99864 * 305.30105 * 13 3 2 15 15 C 1.53053 * 109.36523 * 176.81594 * 14 13 3 16 16 N 1.46958 * 109.36308 * 58.40078 * 15 14 13 17 17 C 1.46901 * 110.99639 * 176.81592 * 16 15 14 18 18 C 1.46957 * 110.88109 * 300.67989 * 16 15 14 19 19 C 1.46956 * 110.99986 * 181.50600 * 13 3 2 20 20 H 1.09006 * 109.47593 * 183.83974 * 1 2 3 21 21 H 1.08997 * 109.47452 * 303.84044 * 1 2 3 22 22 H 1.09003 * 109.47263 * 63.84340 * 1 2 3 23 23 H 1.08995 * 109.47530 * 239.99555 * 2 1 3 24 24 H 1.09004 * 109.46825 * 119.99966 * 2 1 3 25 25 H 0.96995 * 120.00262 * 180.02562 * 8 7 5 26 26 H 1.09000 * 109.48873 * 296.78152 * 14 13 3 27 27 H 1.08993 * 109.49029 * 56.84788 * 14 13 3 28 28 H 1.09006 * 109.48637 * 298.43442 * 15 14 13 29 29 H 1.08998 * 109.50850 * 178.37850 * 15 14 13 30 30 H 1.08998 * 109.47211 * 183.80228 * 17 16 15 31 31 H 1.09004 * 109.46865 * 303.79583 * 17 16 15 32 32 H 1.08995 * 109.47514 * 63.79845 * 17 16 15 33 33 H 1.09000 * 109.48873 * 299.35580 * 18 16 15 34 34 H 1.09000 * 109.50272 * 179.30186 * 18 16 15 35 35 H 1.08997 * 109.48692 * 303.15336 * 19 13 3 36 36 H 1.09006 * 109.49015 * 63.21807 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 -0.0457 5 6 1.5899 2.1344 1.2608 6 1 0.9310 2.9882 1.2024 7 6 2.0192 1.6777 2.4888 8 7 1.4102 2.0707 3.5862 9 14 3.4659 0.5007 2.5938 10 1 4.7115 1.2686 2.8465 11 1 3.2428 -0.4600 3.7040 12 1 3.5934 -0.2424 1.3144 13 7 1.5007 2.1524 -1.1675 14 6 1.8140 1.4349 -2.4112 15 6 1.1688 2.1624 -3.5931 16 7 1.6670 3.5440 -3.6457 17 6 1.1277 4.2539 -4.8132 18 6 1.3538 4.2615 -2.4020 19 6 1.9989 3.5340 -1.2202 20 1 -0.3634 -1.0254 0.0688 21 1 -0.3634 0.5723 0.8535 22 1 -0.3634 0.4530 -0.9224 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 1.7125 1.7496 4.4501 26 1 2.8946 1.4027 -2.5500 27 1 1.4240 0.4188 -2.3529 28 1 0.0860 2.1709 -3.4677 29 1 1.4236 1.6485 -4.5199 30 1 1.5644 5.2512 -4.8656 31 1 1.3738 3.7014 -5.7200 32 1 0.0448 4.3360 -4.7203 33 1 0.2731 4.2937 -2.2631 34 1 1.7434 5.2778 -2.4602 35 1 1.7438 4.0481 -0.2935 36 1 3.0817 3.5255 -1.3456 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036986708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:07:12 Heat of formation + Delta-G solvation = -5.101066 kcal Electronic energy + Delta-G solvation = -15243.861150 eV Core-core repulsion = 12955.327025 eV Total energy + Delta-G solvation = -2288.534124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32274 -37.51538 -34.55279 -33.31996 -31.80075 -29.61551 -27.84627 -25.31130 -24.46649 -23.84106 -21.52680 -20.39714 -18.50485 -17.47455 -16.38170 -15.94443 -15.80546 -15.74722 -15.30521 -15.08163 -14.72349 -14.45556 -13.77175 -13.32034 -13.10635 -12.92157 -12.86123 -12.61058 -12.40423 -12.15949 -12.01103 -11.88917 -11.77900 -11.42602 -11.10840 -10.86092 -10.54486 -9.30536 -8.93854 -8.26188 -6.21842 1.31549 1.36983 1.45071 2.36179 3.04777 3.06073 3.25857 4.03818 4.17516 4.21262 4.35841 4.43760 4.49389 4.51185 4.67239 4.67935 4.70112 4.75352 4.89579 4.99875 5.03429 5.04264 5.11016 5.14691 5.23980 5.35166 5.39602 5.72029 5.82332 6.02825 6.07934 6.19180 6.43227 6.75295 6.81465 7.40193 8.90375 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043345 B = 0.009569 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.819429 B = 2925.446290 C = 3120.715375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.194 3.806 4 H -0.019 1.019 5 C -0.494 4.494 6 H 0.037 0.963 7 C 0.022 3.978 8 N -0.941 5.941 9 Si 0.918 3.082 10 H -0.284 1.284 11 H -0.285 1.285 12 H -0.231 1.231 13 N -0.531 5.531 14 C 0.049 3.951 15 C 0.065 3.935 16 N -0.557 5.557 17 C 0.027 3.973 18 C 0.069 3.931 19 C 0.068 3.932 20 H 0.049 0.951 21 H 0.031 0.969 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.031 0.969 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 -0.905 -15.262 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.085 3.915 4 H -0.002 1.002 5 C -0.533 4.533 6 H 0.056 0.944 7 C -0.176 4.176 8 N -0.581 5.581 9 Si 0.743 3.257 10 H -0.210 1.210 11 H -0.211 1.211 12 H -0.154 1.154 13 N -0.256 5.256 14 C -0.079 4.079 15 C -0.063 4.063 16 N -0.282 5.282 17 C -0.120 4.120 18 C -0.060 4.060 19 C -0.061 4.061 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.053 0.947 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.747 -0.924 -15.088 15.134 hybrid contribution 0.595 -0.187 0.978 1.160 sum 1.343 -1.111 -14.109 14.217 Atomic orbital electron populations 1.21359 0.95008 0.99419 1.01435 1.21911 0.97659 0.96419 0.99599 1.19478 0.91206 0.91955 0.88812 1.00170 1.20961 1.28272 1.14241 0.89786 0.94438 1.25593 0.98737 0.97981 0.95296 1.70095 1.41188 1.48044 0.98754 0.86333 0.80309 0.79787 0.79289 1.21008 1.21097 1.15382 1.62045 1.59430 1.02012 1.02115 1.22293 0.97848 0.98363 0.89410 1.22149 0.97095 0.88890 0.98163 1.62194 1.59813 1.02952 1.03274 1.22390 0.97410 0.99571 0.92652 1.22080 0.97998 0.97371 0.88528 1.21945 0.96112 0.90206 0.97793 0.93245 0.94978 0.92453 0.92186 0.93926 0.92761 0.95773 0.89474 0.94720 0.88393 0.90650 0.90007 0.95652 0.95080 0.89341 0.92031 0.96203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.41 71.98 0.68 -3.95 16 2 C -0.12 -4.95 4.41 30.59 0.13 -4.81 16 3 C 0.19 9.05 1.30 44.17 0.06 9.10 16 4 H -0.02 -0.93 6.90 -2.39 -0.02 -0.95 16 5 C -0.49 -27.77 7.09 25.60 0.18 -27.58 16 6 H 0.04 2.37 7.15 -2.91 -0.02 2.35 16 7 C 0.02 1.25 5.34 84.65 0.45 1.70 16 8 N -0.94 -58.37 13.96 21.44 0.30 -58.08 16 9 Si 0.92 43.82 25.74 68.60 1.77 45.59 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.23 -10.06 5.37 99.48 0.53 -9.52 16 13 N -0.53 -21.76 3.81 -874.88 -3.33 -25.09 16 14 C 0.05 1.62 4.95 86.31 0.43 2.05 16 15 C 0.07 1.78 5.62 86.31 0.49 2.26 16 16 N -0.56 -15.46 4.97 -921.94 -4.58 -20.04 16 17 C 0.03 0.56 9.60 127.69 1.23 1.79 16 18 C 0.07 2.15 5.62 86.31 0.49 2.64 16 19 C 0.07 2.69 5.39 86.31 0.47 3.16 16 20 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 21 H 0.03 1.52 7.17 -2.39 -0.02 1.50 16 22 H 0.06 2.17 7.15 -2.39 -0.02 2.15 16 23 H 0.06 2.16 6.42 -2.39 -0.02 2.14 16 24 H 0.04 1.88 4.65 -2.38 -0.01 1.86 16 25 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 2.70 5.72 -2.39 -0.01 2.69 16 28 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.10 2.14 8.13 -2.39 -0.02 2.12 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.78 6.52 -2.39 -0.02 2.76 16 36 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -63.78 268.18 -0.40 -64.18 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.86 Total: 7.09 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.59 Total: -13.65 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -7.61 Total: -103.21 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.77 Total: 45.59 kcal Total: -63.78 -0.40 -64.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036986708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.080 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds