Wall clock time and date at job start Mon Mar 30 2020 17:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.08999 * 117.49959 * 144.99502 * 5 2 1 7 7 C 1.50701 * 117.49727 * 0.02562 * 5 2 1 8 8 O 1.21288 * 120.00171 * 0.02562 * 7 5 2 9 9 N 1.34774 * 120.00330 * 179.97438 * 7 5 2 10 10 C 1.46501 * 120.00405 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47143 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36940 * 120.00219 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99690 * 0.02562 * 13 12 11 15 15 C 1.38804 * 120.00532 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99737 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00409 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46897 * 59.99934 * 17 15 13 19 19 H 1.48499 * 109.47259 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46920 * 300.00156 * 17 15 13 21 21 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 22 22 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 23 23 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 24 24 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 25 25 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 26 26 H 0.97005 * 119.99431 * 0.02562 * 9 7 5 27 27 H 1.09001 * 109.46610 * 300.00061 * 10 9 7 28 28 H 1.08998 * 109.46855 * 59.99765 * 10 9 7 29 29 H 1.08994 * 109.47424 * 300.00038 * 11 10 9 30 30 H 1.08997 * 109.47139 * 59.99680 * 11 10 9 31 31 H 0.96996 * 120.00459 * 359.97438 * 12 11 10 32 32 H 0.97005 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 3.1713 -0.8746 -1.2689 7 6 1.3720 -2.1398 -1.4619 8 8 0.1638 -2.0520 -1.4031 9 7 1.9415 -3.1483 -2.1512 10 6 1.1012 -4.1387 -2.8289 11 6 1.9903 -5.1663 -3.5320 12 7 1.1499 -6.1570 -4.2091 13 6 1.7286 -7.1811 -4.9103 14 1 2.8045 -7.2587 -4.9637 15 6 0.9325 -8.1195 -5.5524 16 7 -0.3788 -8.0248 -5.4877 17 14 1.7218 -9.5169 -6.5082 18 1 2.5653 -10.3277 -5.5937 19 1 0.6621 -10.3751 -7.0962 20 1 2.5656 -8.9585 -7.5951 21 1 -0.3633 -0.9269 0.4437 22 1 -0.3634 0.8477 0.5808 23 1 -0.3633 0.0792 -1.0246 24 1 3.1713 -0.8747 1.2690 25 1 1.6112 -1.8583 1.2685 26 1 2.9079 -3.2183 -2.1986 27 1 0.4715 -4.6432 -2.0961 28 1 0.4723 -3.6385 -3.5654 29 1 2.6196 -4.6615 -4.2648 30 1 2.6195 -5.6665 -2.7958 31 1 0.1837 -6.0877 -4.1609 32 1 -0.9352 -8.6803 -5.9367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122959386.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:05:57 Heat of formation + Delta-G solvation = -7.368725 kcal Electronic energy + Delta-G solvation = -13573.623073 eV Core-core repulsion = 11149.157521 eV Total energy + Delta-G solvation = -2424.465552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.00882 -36.93359 -35.45072 -33.80597 -31.24585 -28.85570 -27.66612 -24.54055 -22.99257 -21.48737 -21.09992 -19.71339 -17.26435 -17.10267 -15.58159 -15.40209 -15.00921 -14.52999 -13.85652 -13.61813 -13.20221 -13.04090 -12.89629 -12.58060 -12.26530 -11.59346 -11.43520 -11.09870 -10.81556 -10.79656 -10.36531 -10.19657 -10.14438 -9.80103 -9.43301 -8.96529 -8.78797 -6.99412 -5.79315 -3.10201 2.59620 3.25546 3.42983 3.47269 3.48710 3.71004 4.49826 4.57452 4.70131 4.72575 5.05168 5.23739 5.47919 5.50468 5.57243 5.68703 5.78899 5.79361 5.91659 5.97428 6.04936 6.16158 6.43927 6.55445 6.71283 6.77938 7.65306 7.68042 8.37595 8.40309 9.49445 10.04303 10.39141 11.43231 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.088960 B = 0.004679 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.671100 B = 5982.115654 C = 6201.585720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.153 4.153 5 C -0.193 4.193 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.537 6.537 9 N -0.721 5.721 10 C 0.111 3.889 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.399 0.601 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 14.512 10.655 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.190 4.190 5 C -0.214 4.214 6 H 0.139 0.861 7 C 0.324 3.676 8 O -0.415 6.415 9 N -0.371 5.371 10 C -0.012 4.012 11 C 0.017 3.983 12 N -0.375 5.375 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.867 14.430 10.596 18.839 hybrid contribution 0.731 -0.890 -0.678 1.336 sum 6.598 13.540 9.919 18.034 Atomic orbital electron populations 1.21367 0.91466 1.01384 1.02702 1.22358 0.96663 0.93424 1.01415 0.87303 1.23088 1.02989 1.01968 0.90959 1.22310 1.02084 1.01268 0.95733 0.86050 1.19628 0.88149 0.81275 0.78571 1.90709 1.14541 1.74790 1.61426 1.45916 1.10579 1.27715 1.52931 1.21566 0.93896 0.89417 0.96350 1.20753 0.93346 0.89855 0.94394 1.42187 1.05472 1.28676 1.61154 1.19154 0.91641 1.02503 1.24345 0.91088 1.24777 0.95397 0.99454 1.01136 1.69663 1.02572 1.37682 1.48001 0.86219 0.77904 0.81962 0.79781 1.21177 1.21589 1.21183 0.91670 0.93446 0.91290 0.87962 0.88210 0.76697 0.91373 0.91342 0.95822 0.95826 0.78006 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.43 37.16 0.31 -0.98 16 2 C -0.12 -1.18 6.40 -90.62 -0.58 -1.76 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.38 9.89 -26.69 -0.26 -1.65 16 5 C -0.19 -2.02 6.19 -91.74 -0.57 -2.59 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.54 7.80 7.60 -10.99 -0.08 7.71 16 8 O -0.54 -9.66 13.11 5.55 0.07 -9.59 16 9 N -0.72 -10.14 5.56 -60.29 -0.33 -10.47 16 10 C 0.11 1.96 5.79 -4.04 -0.02 1.94 16 11 C 0.14 2.88 6.37 -4.04 -0.03 2.86 16 12 N -0.73 -18.81 5.60 -59.92 -0.34 -19.15 16 13 C -0.25 -6.92 9.99 -15.06 -0.15 -7.07 16 14 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 17 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.06 0.86 7.01 -51.93 -0.36 0.50 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.92 7.26 -51.93 -0.38 0.55 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 26 H 0.40 4.46 8.47 -40.82 -0.35 4.11 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.39 10.52 7.67 -40.82 -0.31 10.21 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -32.32 274.09 -6.99 -39.31 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.75 Total: 8.11 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.96 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.05 Total: -57.35 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.32 -6.99 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122959386.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.942 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds